Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_J12
         (878 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    27   0.30 
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               25   1.2  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    23   2.8  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    23   4.9  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    23   4.9  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    23   4.9  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    23   4.9  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    22   8.6  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    22   8.6  

>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 26.6 bits (56), Expect = 0.30
 Identities = 25/99 (25%), Positives = 44/99 (44%), Gaps = 3/99 (3%)
 Frame = +2

Query: 101 QENRQVEEIKLKSKKPRNLRTRIKDEDSDDEEHILQRLQETKEIQKLRERPNGVSIIALA 280
           Q+ R+ E  KLK K        IK   + +++ +L+R +   +  + R+R N  +     
Sbjct: 46  QQEREQEYEKLKRKMILEYELYIKYSHTHEKKLVLERSKTKSKSPESRDRSNTSN----- 100

Query: 281 TGEKVTLEDEITCKDP---FKVKTGGMINMQALKNGKLK 388
           T +   L D++   D    F+   G  IN   L+  KL+
Sbjct: 101 TSKTFILSDKLESSDDTSLFRGPKGIQINATELQKIKLE 139


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = +2

Query: 143 KPRNLRTRIKDEDSDDEEHILQRLQETKEIQKLRERPNGV 262
           KP+   T  KD+D  D E+I  + +         ERPN +
Sbjct: 80  KPKE-ETDDKDDDESDNENIKSQKEFPNSSSSDDERPNSI 118


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 14/47 (29%), Positives = 27/47 (57%)
 Frame = +2

Query: 458 DEEMMKYIEEQLAKRKEGCDKDNKDHNHTETLKYLSPEEAALLSLPD 598
           D+  M+Y   QL  R++  D+  + ++    LKYL+  +A+ + +PD
Sbjct: 74  DDVTMEY-SVQLTFREQWLDERLRFNDFGGRLKYLTLTDASRVWMPD 119


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = -1

Query: 632 LLTSDLKRLSNGLARKVRLLPRETN 558
           L+++D+  + NGL R +RL   +TN
Sbjct: 46  LISNDILPVCNGLWRWIRLTYGQTN 70


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = -1

Query: 632 LLTSDLKRLSNGLARKVRLLPRETN 558
           L+++D+  + NGL R +RL   +TN
Sbjct: 84  LISNDILPVCNGLWRWIRLTYGQTN 108


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +2

Query: 110 RQVEEIKLKSKKPRNLRTRIKD 175
           +QVEE     K PR +R RI +
Sbjct: 393 KQVEEYMAYRKLPREMRQRITE 414


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +2

Query: 110 RQVEEIKLKSKKPRNLRTRIKD 175
           +QVEE     K PR +R RI +
Sbjct: 361 KQVEEYMAYRKLPREMRQRITE 382


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = -2

Query: 793 HISWNKLRWAIFFVLSIPY 737
           H+ WN   +A   V+ +PY
Sbjct: 66  HLKWNASEFAGIRVIRVPY 84


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -2

Query: 421 AYSGIIRIIHLLQFPVLKGLHVNH 350
           A+ GI+   H+LQF    G   N+
Sbjct: 478 AFIGIVNQFHILQFITKNGTSNNY 501


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 200,785
Number of Sequences: 438
Number of extensions: 3733
Number of successful extensions: 22
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28523595
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)