Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_J11
         (888 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    27   0.30 
AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex det...    26   0.40 
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    23   2.8  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    22   6.5  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    22   6.5  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    22   8.6  
DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex det...    22   8.6  
DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex det...    22   8.6  
AY352276-1|AAQ67417.1|  385|Apis mellifera complementary sex det...    22   8.6  

>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 26.6 bits (56), Expect = 0.30
 Identities = 19/110 (17%), Positives = 50/110 (45%), Gaps = 1/110 (0%)
 Frame = +3

Query: 372 INEDEDELVKHPSETNEKPSDKSNTDTTSRSSIESNSDNTQRGSKKRNKNEVDGLFSPEQ 551
           I E +  LV +  ++  +    + +  + RS        + R S++R+ +        E+
Sbjct: 189 IEEHDTVLVVNIKKSGNESKKYATSSNSLRSRTHGFQHTSSRYSRERSCSRDRNREYKEK 248

Query: 552 DKRLKRNASVKAQSIISKQVNVNLTQKLRRENSAAKNDKQ-NQPKDEDKE 698
           D+R ++  + K + +  +      ++   RE ++ KN+++  + ++  KE
Sbjct: 249 DRRYEKLHNEKEKLLEERTSRKRYSRSREREQNSYKNEREYRKYRERSKE 298


>AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 26.2 bits (55), Expect = 0.40
 Identities = 17/100 (17%), Positives = 45/100 (45%)
 Frame = +3

Query: 372 INEDEDELVKHPSETNEKPSDKSNTDTTSRSSIESNSDNTQRGSKKRNKNEVDGLFSPEQ 551
           I E +  LV +  ++  +    + +  + RS        + R S++R+ +        E+
Sbjct: 178 IEEHDTVLVVNIKKSGNESKKYATSSNSLRSRTHGFQHTSSRYSRERSCSRDRNREYKEK 237

Query: 552 DKRLKRNASVKAQSIISKQVNVNLTQKLRRENSAAKNDKQ 671
           D+R ++  + K + +  +      ++   RE ++ KN+++
Sbjct: 238 DRRYEKLHNEKEKLLEERTSRKRYSRSREREQNSYKNERE 277


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 19/86 (22%), Positives = 40/86 (46%), Gaps = 4/86 (4%)
 Frame = +3

Query: 420 EKPSDKSNTDTTSRSSIESNSDNTQ----RGSKKRNKNEVDGLFSPEQDKRLKRNASVKA 587
           EK  ++S    TS +S+ S + + Q    R S++R+ +        E+D+R ++  + K 
Sbjct: 201 EKSGNESKKYATSSNSLRSRTHDFQHTSSRYSRERSCSRDRNREYKEKDRRYEKLHNEKE 260

Query: 588 QSIISKQVNVNLTQKLRRENSAAKND 665
           + +  +      +    RE  + KN+
Sbjct: 261 KLLEERTSRKRYSCSREREQKSYKNE 286


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 16/98 (16%), Positives = 41/98 (41%)
 Frame = +3

Query: 372 INEDEDELVKHPSETNEKPSDKSNTDTTSRSSIESNSDNTQRGSKKRNKNEVDGLFSPEQ 551
           I E +  LV +  ++  +    + +  + RS        +   S++R+ +        E+
Sbjct: 189 IEEHDTVLVVNIKKSGNESKKYATSSNSLRSRTHGFQHTSSHYSRERSCSRDRNREYKEK 248

Query: 552 DKRLKRNASVKAQSIISKQVNVNLTQKLRRENSAAKND 665
           D+R ++  + K + +  +      ++   RE  + KN+
Sbjct: 249 DRRYEKLHNEKEKLLEERTSRKRYSRSREREQKSYKNE 286


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 11/36 (30%), Positives = 16/36 (44%)
 Frame = +3

Query: 390 ELVKHPSETNEKPSDKSNTDTTSRSSIESNSDNTQR 497
           ELV       E+PSD+   +      ++S  D T R
Sbjct: 270 ELVTVEPILTERPSDRQRNEILLSDELDSVDDRTLR 305


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 13/70 (18%), Positives = 31/70 (44%), Gaps = 2/70 (2%)
 Frame = +3

Query: 375 NEDEDELVKHPSETNEKPSDKSNTDTTSRSSIESN--SDNTQRGSKKRNKNEVDGLFSPE 548
           N++ ++   +    N +  +K N +  + +    N  +DN Q G+++    + D   +  
Sbjct: 449 NQNANKQNGNRQNDNRQNDNKQNGNRQNDNKQNGNRQNDNKQNGNRQNGNKQNDNKQNGN 508

Query: 549 QDKRLKRNAS 578
           +    KRN +
Sbjct: 509 RQNDNKRNGN 518


>DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 11/52 (21%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
 Frame = +3

Query: 546 EQDKRLKRNASVKAQSIISKQVNVNLTQKLRRENSAAKNDKQ-NQPKDEDKE 698
           E+D+R ++  + K + +  +      ++   RE ++ KN+K+  + ++  KE
Sbjct: 14  EKDRRYEKLHNEKEKLLEERTSRKRYSRSREREQNSYKNEKEYRKYRERSKE 65


>DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 11/52 (21%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
 Frame = +3

Query: 546 EQDKRLKRNASVKAQSIISKQVNVNLTQKLRRENSAAKNDKQ-NQPKDEDKE 698
           E+D+R ++  + K + +  +      ++   RE ++ KN+K+  + ++  KE
Sbjct: 14  EKDRRYEKLHNEKEKLLEERTSRKRYSRSREREQNSYKNEKEYRKYRERSKE 65


>AY352276-1|AAQ67417.1|  385|Apis mellifera complementary sex
           determiner protein.
          Length = 385

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 17/86 (19%), Positives = 40/86 (46%), Gaps = 4/86 (4%)
 Frame = +3

Query: 420 EKPSDKSNTDTTSRSSIESNSDNTQ----RGSKKRNKNEVDGLFSPEQDKRLKRNASVKA 587
           EK  ++S    TS +S+ + +   Q    R S++R+ +        ++D+R ++  + K 
Sbjct: 201 EKSGNESKKYATSSNSLRNRTHGFQHTSSRYSRERSCSRDRNREYKKKDRRYEKLHNEKK 260

Query: 588 QSIISKQVNVNLTQKLRRENSAAKND 665
           + +  +      ++   RE  + KN+
Sbjct: 261 KLLEERTSRKRYSRSREREQKSYKNE 286


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 197,255
Number of Sequences: 438
Number of extensions: 4258
Number of successful extensions: 14
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28662543
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)