Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_J10
         (875 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC337.06c |cwf15||complexed with Cdc5 protein Cwf15 |Schizosac...    47   4e-06
SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomy...    30   0.50 
SPBC28F2.10c |kap1||chromatin remodeling complex subunit Ngg1 |S...    27   3.5  
SPAC17G8.12 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   6.1  
SPCC613.09 |sen54||tRNA-splicing endonuclease subunit Sen54 |Sch...    26   6.1  

>SPBC337.06c |cwf15||complexed with Cdc5 protein Cwf15
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 265

 Score = 46.8 bits (106), Expect = 4e-06
 Identities = 27/49 (55%), Positives = 29/49 (59%)
 Frame = +3

Query: 375 MTTAARPTFDPARGGQGRGEKDLSAISRQYSSRDLPGHTKLKYRESGQG 521
           MTTA RP FDPARG          A +R  SSR LP H KLKYR+  QG
Sbjct: 1   MTTAHRPQFDPARGHSEM------APTRITSSRALPAHLKLKYRQESQG 43


>SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 29.9 bits (64), Expect = 0.50
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +1

Query: 568 DREKDVKTTTTKRTSEPQAKRTKVDQVPAASLDADDPLE 684
           D+E+D+  TT K++SEP A    +    A  + + D  E
Sbjct: 577 DKEEDLNITTVKQSSEPTADDNLIPNKEAEIIQSSDEFE 615


>SPBC28F2.10c |kap1||chromatin remodeling complex subunit Ngg1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 551

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 11/53 (20%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
 Frame = +1

Query: 529 EELRSRDFRKELDDREKDVKTTTTKRTSEPQAKRTKV--DQVPAASLDADDPL 681
           EE+  ++F+  +DD +K ++    KR    + K+ ++  D++ +++     P+
Sbjct: 450 EEMAFQEFQNVMDDLDKQIEQAYVKRNRSLKVKKKRIVTDKIGSSATSGSFPV 502


>SPAC17G8.12 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 608

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 15/51 (29%), Positives = 27/51 (52%)
 Frame = +1

Query: 499 NTGNQVKGTSEELRSRDFRKELDDREKDVKTTTTKRTSEPQAKRTKVDQVP 651
           +TG Q++  ++E        EL    + ++    K TS+P+AK+T V  +P
Sbjct: 445 STGKQIEPPNDE---PSIGNELLPLFESLRFENRKTTSKPKAKKTLVTSIP 492


>SPCC613.09 |sen54||tRNA-splicing endonuclease subunit Sen54
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 384

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 18/67 (26%), Positives = 29/67 (43%), Gaps = 4/67 (5%)
 Frame = +3

Query: 204 IPISVN----NHSAIKVLLHVYKPTYCYAKCL*HHLEFFECIQAQ*QDIKSPFIKSAPAF 371
           +PI+ N    + S  ++  H YKP+  + K      +F  C+ +  QD   P I    A 
Sbjct: 255 VPIACNLITSSDSLFQITFHAYKPSASFKKSALSEPDFRICVVSS-QDTLLPTIFEIDAL 313

Query: 372 IMTTAAR 392
             +T  R
Sbjct: 314 FSSTPLR 320


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,465,635
Number of Sequences: 5004
Number of extensions: 43096
Number of successful extensions: 120
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)