Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_J10
         (875 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0043 - 412675-412798,412891-412997,413104-413197,413733-41...    57   2e-08
05_07_0190 - 28279328-28280149                                         29   6.5  
01_06_0541 - 30088910-30089107,30089421-30089477,30089563-300897...    29   6.5  

>06_01_0043 -
           412675-412798,412891-412997,413104-413197,413733-413820,
           413902-413943,414117-414223,414812-414942
          Length = 230

 Score = 56.8 bits (131), Expect = 2e-08
 Identities = 27/48 (56%), Positives = 34/48 (70%)
 Frame = +3

Query: 375 MTTAARPTFDPARGGQGRGEKDLSAISRQYSSRDLPGHTKLKYRESGQ 518
           MTTAARPT+ PA+GG  +G   +   S++YSSRDL  HT LK R+ GQ
Sbjct: 1   MTTAARPTWAPAKGGNEQGGTRIFGPSQKYSSRDLAAHTTLKPRKEGQ 48



 Score = 29.1 bits (62), Expect = 4.9
 Identities = 13/36 (36%), Positives = 23/36 (63%)
 Frame = +1

Query: 523 TSEELRSRDFRKELDDREKDVKTTTTKRTSEPQAKR 630
           T EEL+ R+ R EL++RE+   ++  K  +E + +R
Sbjct: 50  TQEELQKRNLRDELEERERKHYSSKDKSYAEERDRR 85


>05_07_0190 - 28279328-28280149
          Length = 273

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 17/44 (38%), Positives = 20/44 (45%)
 Frame = +1

Query: 553 RKELDDREKDVKTTTTKRTSEPQAKRTKVDQVPAASLDADDPLE 684
           R    +R     TTTT  TS        V  + AAS+D D PLE
Sbjct: 214 RPVASERAASETTTTTTTTSSSYGSPDGVLSMSAASVDGDCPLE 257


>01_06_0541 -
           30088910-30089107,30089421-30089477,30089563-30089721,
           30090639-30090777,30090863-30091247,30091612-30091816
          Length = 380

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 21/57 (36%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
 Frame = +3

Query: 354 KSAPAFIMTTAARPTFDPARGGQGRGEKDLSAISRQY-SSRDLPGHTKLKYRESGQG 521
           K AP       AR    P+RGG GRGE+      R Y  +RD  G     Y + G G
Sbjct: 61  KPAPPTQAAREARGGGAPSRGGFGRGERGRGRGGRGYGQNRDFGGDNANGY-QGGYG 116


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,182,857
Number of Sequences: 37544
Number of extensions: 260291
Number of successful extensions: 649
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 640
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 649
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2467979640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)