Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_J10
         (875 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435328-1|ABD92643.1|  143|Apis mellifera OBP11 protein.              24   1.6  
DQ435326-1|ABD92641.1|  132|Apis mellifera OBP9 protein.               24   2.1  
AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor p...    23   2.8  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    23   2.8  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    23   4.9  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    23   4.9  

>DQ435328-1|ABD92643.1|  143|Apis mellifera OBP11 protein.
          Length = 143

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +2

Query: 425 PRRERLKCYFSTVFQQ 472
           P  E+LKCYF+ V ++
Sbjct: 63  PEDEKLKCYFNCVLEK 78


>DQ435326-1|ABD92641.1|  132|Apis mellifera OBP9 protein.
          Length = 132

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -2

Query: 403 SKVGLAAVVIMNAGADLMNGDFMSCYCACIHSKN 302
           SKV  AA+  M AG    +   + CY  C  +K+
Sbjct: 33  SKVSWAALKKMKAGDMEQDDQNLKCYLKCFMTKH 66


>AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor
           protein.
          Length = 139

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 9/36 (25%), Positives = 19/36 (52%)
 Frame = -3

Query: 690 IAFKRIISIKTCCRNLINLSSFCLWFTCTFCSRSFN 583
           + F  +  ++  CRN I+ + F + F   +C+ + N
Sbjct: 23  LPFFTMYLVRAFCRNCIHPTVFSVLFWLGYCNSAIN 58


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 9/36 (25%), Positives = 19/36 (52%)
 Frame = -3

Query: 690 IAFKRIISIKTCCRNLINLSSFCLWFTCTFCSRSFN 583
           + F  +  ++  CRN I+ + F + F   +C+ + N
Sbjct: 471 LPFFTMYLVRAFCRNCIHPTVFSVLFWLGYCNSAIN 506


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 7/14 (50%), Positives = 12/14 (85%)
 Frame = +3

Query: 330 QDIKSPFIKSAPAF 371
           +++KSP ++S PAF
Sbjct: 462 EEVKSPVLRSPPAF 475


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 7/14 (50%), Positives = 12/14 (85%)
 Frame = +3

Query: 330 QDIKSPFIKSAPAF 371
           +++KSP ++S PAF
Sbjct: 462 EEVKSPVLRSPPAF 475


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,368
Number of Sequences: 438
Number of extensions: 2993
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28402218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)