Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP13_F_J09
(996 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41557-6|AAA83307.1| 589|Caenorhabditis elegans Collagen sequen... 32 0.73
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 29 3.5
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 29 3.5
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 29 3.5
Z73102-2|CAB63428.1| 341|Caenorhabditis elegans Hypothetical pr... 29 5.2
Z73102-1|CAA97419.1| 298|Caenorhabditis elegans Hypothetical pr... 29 5.2
Z83120-6|CAB76722.1| 809|Caenorhabditis elegans Hypothetical pr... 28 9.0
Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical pr... 28 9.0
Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical pr... 28 9.0
U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical pr... 28 9.0
>U41557-6|AAA83307.1| 589|Caenorhabditis elegans Collagen sequence
x-hybridizingprotein 1 protein.
Length = 589
Score = 31.9 bits (69), Expect = 0.73
Identities = 18/42 (42%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Frame = +3
Query: 762 FXXGGAXPXGGXXKKSPGGFXPXGXPPPXGXP-PLXPXTPSP 884
F GA P GG PG F P G PP G P P P P
Sbjct: 170 FDPSGAPPSGGP----PGPFGPSGAPPSGGPPGPFNPSEAPP 207
Score = 31.9 bits (69), Expect = 0.73
Identities = 18/42 (42%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Frame = +3
Query: 762 FXXGGAXPXGGXXKKSPGGFXPXGXPPPXGXP-PLXPXTPSP 884
F GA P GG PG F P G PP G P P P P
Sbjct: 275 FDPSGAPPSGGP----PGPFDPSGAPPSGGPPGPFDPSGAQP 312
Score = 31.5 bits (68), Expect = 0.97
Identities = 18/42 (42%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Frame = +3
Query: 762 FXXGGAXPXGGXXKKSPGGFXPXGXPPPXGXP-PLXPXTPSP 884
F GA P GG PG F P G PP G P P P P
Sbjct: 215 FDPSGAPPSGGP----PGPFNPSGAPPSGGPPGPFDPSGAPP 252
Score = 31.5 bits (68), Expect = 0.97
Identities = 18/42 (42%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Frame = +3
Query: 762 FXXGGAXPXGGXXKKSPGGFXPXGXPPPXGXP-PLXPXTPSP 884
F GA P GG PG F P G PP G P P P P
Sbjct: 230 FNPSGAPPSGGP----PGPFDPSGAPPSGGPPGPFNPSGAPP 267
Score = 31.5 bits (68), Expect = 0.97
Identities = 18/42 (42%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Frame = +3
Query: 762 FXXGGAXPXGGXXKKSPGGFXPXGXPPPXGXP-PLXPXTPSP 884
F GA P GG PG F P G PP G P P P P
Sbjct: 245 FDPSGAPPSGGP----PGPFNPSGAPPSGGPPGPFDPSGAPP 282
Score = 31.5 bits (68), Expect = 0.97
Identities = 18/42 (42%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Frame = +3
Query: 762 FXXGGAXPXGGXXKKSPGGFXPXGXPPPXGXP-PLXPXTPSP 884
F GA P GG PG F P G PP G P P P P
Sbjct: 260 FNPSGAPPSGGP----PGPFDPSGAPPSGGPPGPFDPSGAPP 297
Score = 31.5 bits (68), Expect = 0.97
Identities = 18/42 (42%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Frame = +3
Query: 762 FXXGGAXPXGGXXKKSPGGFXPXGXPPPXGXP-PLXPXTPSP 884
F GA P GG PG F P G PP G P P P P
Sbjct: 305 FDPSGAQPSGGP----PGPFNPSGAPPSGGPPGPFDPSGAPP 342
Score = 31.5 bits (68), Expect = 0.97
Identities = 18/42 (42%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Frame = +3
Query: 762 FXXGGAXPXGGXXKKSPGGFXPXGXPPPXGXP-PLXPXTPSP 884
F GA P GG PG F P G PP G P P P P
Sbjct: 320 FNPSGAPPSGGP----PGPFDPSGAPPSGGPPGPFNPSGAPP 357
Score = 31.5 bits (68), Expect = 0.97
Identities = 18/42 (42%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Frame = +3
Query: 762 FXXGGAXPXGGXXKKSPGGFXPXGXPPPXGXP-PLXPXTPSP 884
F GA P GG PG F P G PP G P P P P
Sbjct: 335 FDPSGAPPSGGP----PGPFNPSGAPPSGGPPGPFDPSGAPP 372
Score = 31.5 bits (68), Expect = 0.97
Identities = 18/42 (42%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Frame = +3
Query: 762 FXXGGAXPXGGXXKKSPGGFXPXGXPPPXGXP-PLXPXTPSP 884
F GA P GG PG F P G PP G P P P P
Sbjct: 350 FNPSGAPPSGGP----PGPFDPSGAPPSGGPPGPFDPSGAPP 387
Score = 31.5 bits (68), Expect = 0.97
Identities = 18/42 (42%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Frame = +3
Query: 762 FXXGGAXPXGGXXKKSPGGFXPXGXPPPXGXP-PLXPXTPSP 884
F GA P GG PG F P G PP G P P P P
Sbjct: 365 FDPSGAPPSGGP----PGPFDPSGAPPSGGPPGPFDPSGAPP 402
Score = 31.5 bits (68), Expect = 0.97
Identities = 18/42 (42%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Frame = +3
Query: 762 FXXGGAXPXGGXXKKSPGGFXPXGXPPPXGXP-PLXPXTPSP 884
F GA P GG PG F P G PP G P P P P
Sbjct: 380 FDPSGAPPSGGP----PGPFDPSGAPPSGGPPGPFNPSGAPP 417
Score = 31.5 bits (68), Expect = 0.97
Identities = 18/42 (42%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Frame = +3
Query: 762 FXXGGAXPXGGXXKKSPGGFXPXGXPPPXGXP-PLXPXTPSP 884
F GA P GG PG F P G PP G P P P P
Sbjct: 395 FDPSGAPPSGGP----PGPFNPSGAPPSGGPPGPFNPSGAPP 432
Score = 31.5 bits (68), Expect = 0.97
Identities = 18/42 (42%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Frame = +3
Query: 762 FXXGGAXPXGGXXKKSPGGFXPXGXPPPXGXP-PLXPXTPSP 884
F GA P GG PG F P G PP G P P P P
Sbjct: 410 FNPSGAPPSGGP----PGPFNPSGAPPSGGPPGPFNPSGAPP 447
Score = 31.5 bits (68), Expect = 0.97
Identities = 18/42 (42%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Frame = +3
Query: 762 FXXGGAXPXGGXXKKSPGGFXPXGXPPPXGXP-PLXPXTPSP 884
F GA P GG PG F P G PP G P P P P
Sbjct: 425 FNPSGAPPSGGP----PGPFNPSGAPPSGGPPGPFNPSGAPP 462
Score = 31.5 bits (68), Expect = 0.97
Identities = 18/42 (42%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Frame = +3
Query: 762 FXXGGAXPXGGXXKKSPGGFXPXGXPPPXGXP-PLXPXTPSP 884
F GA P GG PG F P G PP G P P P P
Sbjct: 440 FNPSGAPPSGGP----PGPFNPSGAPPSGGPPGPFNPSGAPP 477
Score = 31.5 bits (68), Expect = 0.97
Identities = 18/42 (42%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Frame = +3
Query: 762 FXXGGAXPXGGXXKKSPGGFXPXGXPPPXGXP-PLXPXTPSP 884
F GA P GG PG F P G PP G P P P P
Sbjct: 455 FNPSGAPPSGGP----PGPFNPSGAPPSGGPPGPFDPSGAPP 492
Score = 31.5 bits (68), Expect = 0.97
Identities = 18/42 (42%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Frame = +3
Query: 762 FXXGGAXPXGGXXKKSPGGFXPXGXPPPXGXP-PLXPXTPSP 884
F GA P GG PG F P G PP G P P P P
Sbjct: 470 FNPSGAPPSGGP----PGPFDPSGAPPSGGPPGPFNPSGAPP 507
Score = 31.5 bits (68), Expect = 0.97
Identities = 18/42 (42%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Frame = +3
Query: 762 FXXGGAXPXGGXXKKSPGGFXPXGXPPPXGXP-PLXPXTPSP 884
F GA P GG PG F P G PP G P P P P
Sbjct: 485 FDPSGAPPSGGP----PGPFNPSGAPPSGGPPGPFDPSGAPP 522
Score = 30.7 bits (66), Expect = 1.7
Identities = 16/37 (43%), Positives = 18/37 (48%)
Frame = +3
Query: 774 GAXPXGGXXKKSPGGFXPXGXPPPXGXPPLXPXTPSP 884
GA P GG PG F P G PP G P L + +P
Sbjct: 144 GAPPSGGP----PGPFDPSGAPPSGGPPGLFDPSGAP 176
Score = 30.7 bits (66), Expect = 1.7
Identities = 18/42 (42%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Frame = +3
Query: 762 FXXGGAXPXGGXXKKSPGGFXPXGXPPPXGXP-PLXPXTPSP 884
F GA P GG PG F P G PP G P P P P
Sbjct: 155 FDPSGAPPSGGP----PGLFDPSGAPPSGGPPGPFGPSGAPP 192
Score = 30.7 bits (66), Expect = 1.7
Identities = 18/41 (43%), Positives = 19/41 (46%)
Frame = +3
Query: 762 FXXGGAXPXGGXXKKSPGGFXPXGXPPPXGXPPLXPXTPSP 884
F GA P GG PG F P G PP G PP+ T P
Sbjct: 500 FNPSGAPPSGGP----PGPFDPSGAPPS-GMPPVPLPTDLP 535
Score = 28.3 bits (60), Expect = 9.0
Identities = 17/42 (40%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Frame = +3
Query: 762 FXXGGAXPXGGXXKKSPGGFXPXGXPPPXGXP-PLXPXTPSP 884
F GA P GG PG F P G P G P P P P
Sbjct: 290 FDPSGAPPSGGP----PGPFDPSGAQPSGGPPGPFNPSGAPP 327
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 29.5 bits (63), Expect = 3.9
Identities = 21/69 (30%), Positives = 22/69 (31%), Gaps = 4/69 (5%)
Frame = -2
Query: 623 PPXSXXTXXPPLXGXXTPFPNRNDPGAXXXXXXXXXXGPKXQT----PXPXGGXVXXXXK 456
PP PPL G +P P P A P T P P GG
Sbjct: 259 PPPPPPKGSPPLAGSGSPPP---PPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRA 315
Query: 455 NPPXPPPDP 429
P PPP P
Sbjct: 316 GSPPPPPPP 324
Score = 28.3 bits (60), Expect = 9.0
Identities = 19/66 (28%), Positives = 19/66 (28%)
Frame = +1
Query: 658 PXKGQXPXKGPVGXVFPQRAPPPLXNAXKKXPPXXXXGVGXXPXGEXXKNPXGXSPPWEX 837
P KG P G P A P PP P G P SPP
Sbjct: 263 PPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPP 322
Query: 838 PPXVXP 855
PP P
Sbjct: 323 PPRGSP 328
Score = 24.6 bits (51), Expect(2) = 3.5
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = +3
Query: 801 KKSPGGFXPXGXPPPXGXPPL 863
+++P P PPP G PPL
Sbjct: 250 RQAPPAGSPPPPPPPKGSPPL 270
Score = 23.4 bits (48), Expect(2) = 3.5
Identities = 9/16 (56%), Positives = 9/16 (56%)
Frame = +3
Query: 837 PPPXGXPPLXPXTPSP 884
PPP G PP P SP
Sbjct: 295 PPPTGSPPPPPAGGSP 310
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 29.5 bits (63), Expect = 3.9
Identities = 21/69 (30%), Positives = 22/69 (31%), Gaps = 4/69 (5%)
Frame = -2
Query: 623 PPXSXXTXXPPLXGXXTPFPNRNDPGAXXXXXXXXXXGPKXQT----PXPXGGXVXXXXK 456
PP PPL G +P P P A P T P P GG
Sbjct: 244 PPPPPPKGSPPLAGSGSPPP---PPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRA 300
Query: 455 NPPXPPPDP 429
P PPP P
Sbjct: 301 GSPPPPPPP 309
Score = 28.3 bits (60), Expect = 9.0
Identities = 19/66 (28%), Positives = 19/66 (28%)
Frame = +1
Query: 658 PXKGQXPXKGPVGXVFPQRAPPPLXNAXKKXPPXXXXGVGXXPXGEXXKNPXGXSPPWEX 837
P KG P G P A P PP P G P SPP
Sbjct: 248 PPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPP 307
Query: 838 PPXVXP 855
PP P
Sbjct: 308 PPRGSP 313
Score = 24.6 bits (51), Expect(2) = 3.5
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = +3
Query: 801 KKSPGGFXPXGXPPPXGXPPL 863
+++P P PPP G PPL
Sbjct: 235 RQAPPAGSPPPPPPPKGSPPL 255
Score = 23.4 bits (48), Expect(2) = 3.5
Identities = 9/16 (56%), Positives = 9/16 (56%)
Frame = +3
Query: 837 PPPXGXPPLXPXTPSP 884
PPP G PP P SP
Sbjct: 280 PPPTGSPPPPPAGGSP 295
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 29.5 bits (63), Expect = 3.9
Identities = 21/69 (30%), Positives = 22/69 (31%), Gaps = 4/69 (5%)
Frame = -2
Query: 623 PPXSXXTXXPPLXGXXTPFPNRNDPGAXXXXXXXXXXGPKXQT----PXPXGGXVXXXXK 456
PP PPL G +P P P A P T P P GG
Sbjct: 238 PPPPPPKGSPPLAGSGSPPP---PPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRA 294
Query: 455 NPPXPPPDP 429
P PPP P
Sbjct: 295 GSPPPPPPP 303
Score = 28.3 bits (60), Expect = 9.0
Identities = 19/66 (28%), Positives = 19/66 (28%)
Frame = +1
Query: 658 PXKGQXPXKGPVGXVFPQRAPPPLXNAXKKXPPXXXXGVGXXPXGEXXKNPXGXSPPWEX 837
P KG P G P A P PP P G P SPP
Sbjct: 242 PPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPP 301
Query: 838 PPXVXP 855
PP P
Sbjct: 302 PPRGSP 307
Score = 24.6 bits (51), Expect(2) = 3.5
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = +3
Query: 801 KKSPGGFXPXGXPPPXGXPPL 863
+++P P PPP G PPL
Sbjct: 229 RQAPPAGSPPPPPPPKGSPPL 249
Score = 23.4 bits (48), Expect(2) = 3.5
Identities = 9/16 (56%), Positives = 9/16 (56%)
Frame = +3
Query: 837 PPPXGXPPLXPXTPSP 884
PPP G PP P SP
Sbjct: 274 PPPTGSPPPPPAGGSP 289
>Z73102-2|CAB63428.1| 341|Caenorhabditis elegans Hypothetical
protein B0035.1b protein.
Length = 341
Score = 29.1 bits (62), Expect = 5.2
Identities = 18/59 (30%), Positives = 19/59 (32%)
Frame = +1
Query: 667 GQXPXKGPVGXVFPQRAPPPLXNAXKKXPPXXXXGVGXXPXGEXXKNPXGXSPPWEXPP 843
G P +G G P R PP PP G P P G PP PP
Sbjct: 148 GMMPPRGMPGAYPPPRGYPPAPAPGVYMPPPGMPGAYPPPRMPIGHGPPG-GPPMPGPP 205
>Z73102-1|CAA97419.1| 298|Caenorhabditis elegans Hypothetical
protein B0035.1a protein.
Length = 298
Score = 29.1 bits (62), Expect = 5.2
Identities = 18/59 (30%), Positives = 19/59 (32%)
Frame = +1
Query: 667 GQXPXKGPVGXVFPQRAPPPLXNAXKKXPPXXXXGVGXXPXGEXXKNPXGXSPPWEXPP 843
G P +G G P R PP PP G P P G PP PP
Sbjct: 148 GMMPPRGMPGAYPPPRGYPPAPAPGVYMPPPGMPGAYPPPRMPIGHGPPG-GPPMPGPP 205
>Z83120-6|CAB76722.1| 809|Caenorhabditis elegans Hypothetical
protein R06A4.9 protein.
Length = 809
Score = 28.3 bits (60), Expect = 9.0
Identities = 16/45 (35%), Positives = 19/45 (42%)
Frame = +1
Query: 709 QRAPPPLXNAXKKXPPXXXXGVGXXPXGEXXKNPXGXSPPWEXPP 843
Q+ PPP N + PP G G P G N G W+ PP
Sbjct: 597 QQGPPP--NWRHQGPPMSGPGQGYGPPGRMGGNQGG----WQRPP 635
>Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 28.3 bits (60), Expect = 9.0
Identities = 16/40 (40%), Positives = 17/40 (42%), Gaps = 2/40 (5%)
Frame = +3
Query: 771 GGAXPXGGXXKKSPGG--FXPXGXPPPXGXPPLXPXTPSP 884
GG GG S GG P PPP PP P P+P
Sbjct: 278 GGGGSSGGYAGSSGGGGYSAPAAAPPPPPPPP-PPPAPAP 316
>Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 28.3 bits (60), Expect = 9.0
Identities = 16/40 (40%), Positives = 17/40 (42%), Gaps = 2/40 (5%)
Frame = +3
Query: 771 GGAXPXGGXXKKSPGG--FXPXGXPPPXGXPPLXPXTPSP 884
GG GG S GG P PPP PP P P+P
Sbjct: 278 GGGGSSGGYAGSSGGGGYSAPAAAPPPPPPPP-PPPAPAP 316
>U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical
protein C01G8.9a protein.
Length = 1724
Score = 28.3 bits (60), Expect = 9.0
Identities = 18/59 (30%), Positives = 21/59 (35%), Gaps = 2/59 (3%)
Frame = +1
Query: 658 PXKGQXPXKGPVGXVFPQRAPPPLXNAXKKXPPXXXXGVG--XXPXGEXXKNPXGXSPP 828
P + Q P +GP G PQ+ P P PP P G P G PP
Sbjct: 707 PPQPQQPPQGPPGPPGPQQHPGPYPGYPGYGPPGAMRPPAGFAPPPGAPYGYPPGAPPP 765
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,201,722
Number of Sequences: 27780
Number of extensions: 231847
Number of successful extensions: 1051
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 503
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 982
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2605097262
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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