Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_J07
         (915 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81098-3|CAB03179.1|  131|Caenorhabditis elegans Hypothetical pr...    56   3e-08
U42830-1|AAC48276.1|  131|Caenorhabditis elegans Atp synthase g ...    56   4e-08

>Z81098-3|CAB03179.1|  131|Caenorhabditis elegans Hypothetical
           protein K07A12.3 protein.
          Length = 131

 Score = 56.4 bits (130), Expect = 3e-08
 Identities = 28/93 (30%), Positives = 52/93 (55%), Gaps = 1/93 (1%)
 Frame = +3

Query: 204 KLNIFMKYARVELAPPKLSELPQIRQGIGNLITSAKTGAWKRQTVKEATLNVLVGAEVIF 383
           +L I     + ELAPP+ +++P I+     L    +T  +   ++KE+ +   V  EV+F
Sbjct: 30  RLAILKAVGKHELAPPRSADIPAIKADWAKLQKFIETKQYVNLSIKESLVYSAVALEVVF 89

Query: 384 WFYIGECIGKRHLV-WIRCLNY*FKNKSVEIMQ 479
           WF++GE IG+R++  +I   NY  K+   ++ +
Sbjct: 90  WFFVGEMIGRRYIFGYIVPANYVSKDTKAKVAE 122


>U42830-1|AAC48276.1|  131|Caenorhabditis elegans Atp synthase g
           homolog protein 2 protein.
          Length = 131

 Score = 56.0 bits (129), Expect = 4e-08
 Identities = 22/62 (35%), Positives = 40/62 (64%)
 Frame = +3

Query: 237 ELAPPKLSELPQIRQGIGNLITSAKTGAWKRQTVKEATLNVLVGAEVIFWFYIGECIGKR 416
           ELAPP+ ++ P I+     + +  +TG +K  +++E  +   V  EV+FWF++GE IG+R
Sbjct: 41  ELAPPRQADWPAIKADWAKVQSFIQTGGYKNLSIREGLVYTAVTLEVVFWFFVGEMIGRR 100

Query: 417 HL 422
           ++
Sbjct: 101 YI 102


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,188,171
Number of Sequences: 27780
Number of extensions: 226846
Number of successful extensions: 304
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 300
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 304
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2339274014
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)