Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_J03
         (902 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_1201 - 11419851-11419913,11420090-11420311                       34   0.13 
04_03_0380 - 15150814-15152304                                         31   1.3  
04_03_0348 + 14735581-14737071                                         31   1.3  
10_01_0038 + 437738-438122,439215-439501,440111-440375,440687-44...    31   1.7  
03_02_0916 + 12364557-12364906,12365485-12365592,12365731-12366343     29   6.7  
10_08_0940 - 21708557-21708733,21709058-21709142,21709330-217095...    28   8.8  
01_05_0333 + 21064693-21066006                                         28   8.8  

>07_01_1201 - 11419851-11419913,11420090-11420311
          Length = 94

 Score = 34.3 bits (75), Expect = 0.13
 Identities = 24/81 (29%), Positives = 33/81 (40%), Gaps = 3/81 (3%)
 Frame = +1

Query: 586 LRPPDEHHKNRRSSQRWRN--PTGL*RYQAFPPGKLPRALSCSDPAAYRXTCPP-FSLRE 756
           L PP          Q+WR+  PTG   + +FP G LP A     PA  R    P F  R 
Sbjct: 13  LLPPPPPLPALPQGQQWRSTGPTGKLCFCSFPAGALPPAAGAGQPAPDRQPATPLFPSRV 72

Query: 757 AWRFLIAHAVGISVRXRSFAP 819
           A      + + + +   +F P
Sbjct: 73  AEGLFGLNGIEVGIEGDNFTP 93


>04_03_0380 - 15150814-15152304
          Length = 496

 Score = 31.1 bits (67), Expect = 1.3
 Identities = 15/33 (45%), Positives = 21/33 (63%)
 Frame = -1

Query: 764 RHASRREKGGQVXR*AAGSEQESARGSFPGGNA 666
           R A   EKG ++ R AAG ++ +AR + PGG A
Sbjct: 440 REAMEGEKGAEMRRRAAGWKEAAARAARPGGPA 472


>04_03_0348 + 14735581-14737071
          Length = 496

 Score = 31.1 bits (67), Expect = 1.3
 Identities = 15/33 (45%), Positives = 21/33 (63%)
 Frame = -1

Query: 764 RHASRREKGGQVXR*AAGSEQESARGSFPGGNA 666
           R A   EKG ++ R AAG ++ +AR + PGG A
Sbjct: 440 REAMEGEKGAEMRRRAAGWKEAAARAARPGGPA 472


>10_01_0038 +
           437738-438122,439215-439501,440111-440375,440687-440784
          Length = 344

 Score = 30.7 bits (66), Expect = 1.7
 Identities = 28/88 (31%), Positives = 36/88 (40%)
 Frame = -2

Query: 700 RAHEGAFQGETPGIFIVLSGFATSDLSVDFCDARQGGGAYGKTPATRPFYGSWPFAGLLL 521
           R H+  F G   G    L G +   LS      R GGG     P+TR   G     G + 
Sbjct: 213 RGHDTVFDGVYVGRRWRLGGGSDGVLSSARSGGRGGGGDDSALPSTRS-GGKGDSGGSVA 271

Query: 520 TCSFLRYPLILWITVLPPLSELIPLAAA 437
           T S  R  +     + PPLS LI +A +
Sbjct: 272 TASPHRLQMAGNPRLSPPLSPLISIAGS 299


>03_02_0916 + 12364557-12364906,12365485-12365592,12365731-12366343
          Length = 356

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 22/56 (39%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
 Frame = +2

Query: 398 PLPRSLTRCARSF--GCGERYQLTQRR*YGYPQNQGITQ--ERTCEQKASKRPGTV 553
           P PRS  RC      GCG R Q TQR     P N  IT   E TC   ++  P  +
Sbjct: 150 PYPRSYYRCTHKLDQGCGARRQ-TQRC-EADPSNYDITYYGEHTCRDPSTIIPTAI 203


>10_08_0940 -
           21708557-21708733,21709058-21709142,21709330-21709551,
           21710640-21710815,21711883-21711946,21712433-21712507,
           21715114-21715199,21715297-21716715
          Length = 767

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
 Frame = +2

Query: 347 NESAN---ARGEAVCVLGALPLPRSLTRCAR 430
           +ESAN   AR EAV  +G +P+   L RC+R
Sbjct: 434 DESANVDAARSEAVMRVGGIPMLLDLARCSR 464


>01_05_0333 + 21064693-21066006
          Length = 437

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 18/47 (38%), Positives = 24/47 (51%)
 Frame = -3

Query: 771 EKAPRFPKGERRTGXPVSGRVGTGERTRELSRGKRLVSL*SCRVSPP 631
           E+AP     +RR G PV+ +  TG+  R   R  RL S    +V PP
Sbjct: 394 ERAPLHQ--QRRAGRPVNSQRPTGDMVRSSGRASRLAS----QVRPP 434


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,226,744
Number of Sequences: 37544
Number of extensions: 483461
Number of successful extensions: 1372
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1336
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1372
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2553813320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)