Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_J02
         (1010 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    25   0.82 
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       25   1.1  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    24   2.5  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 25.4 bits (53), Expect = 0.82
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = +3

Query: 852 PPXXXPPPPPP 884
           PP   PPPPPP
Sbjct: 338 PPKPAPPPPPP 348



 Score = 25.4 bits (53), Expect = 0.82
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = +1

Query: 853 PPXXXPPPPPP 885
           PP   PPPPPP
Sbjct: 338 PPKPAPPPPPP 348



 Score = 23.4 bits (48), Expect = 3.3
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +1

Query: 856 PXXXPPPPPPPXXXXP 903
           P    PPPPPP    P
Sbjct: 338 PPKPAPPPPPPSSSGP 353


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 25.0 bits (52), Expect = 1.1
 Identities = 15/43 (34%), Positives = 15/43 (34%), Gaps = 1/43 (2%)
 Frame = +1

Query: 760 PPPXXXGGXP-PXAXPXXPXGPPPRXPXPXXAPPXXXPPPPPP 885
           P     G  P P   P  P    P  P P   PP   PP  PP
Sbjct: 16  PSSGAPGPQPSPHQSPQAPQRGSP--PNPSQGPPPGGPPGAPP 56



 Score = 23.8 bits (49), Expect = 2.5
 Identities = 11/26 (42%), Positives = 11/26 (42%), Gaps = 1/26 (3%)
 Frame = +2

Query: 353 PPXXXXGGPP-PXPXXXXGGXPGXPP 427
           P     G PP P      GG PG PP
Sbjct: 31  PQAPQRGSPPNPSQGPPPGGPPGAPP 56



 Score = 23.4 bits (48), Expect = 3.3
 Identities = 11/33 (33%), Positives = 12/33 (36%)
 Frame = +1

Query: 817 GPPPRXPXPXXAPPXXXPPPPPPPXXXXPRPGP 915
           G P   P P  +P       PP P    P  GP
Sbjct: 19  GAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGP 51



 Score = 22.6 bits (46), Expect = 5.8
 Identities = 11/36 (30%), Positives = 11/36 (30%)
 Frame = +3

Query: 798 PXXXPXGXPPPXXXXRXRPPXXXPPPPPPPXXXXPP 905
           P   P     P    R  PP     PPP      PP
Sbjct: 21  PGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPP 56



 Score = 22.6 bits (46), Expect = 5.8
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = +2

Query: 224 PXXGPPPXGXXEXPP 268
           P  GPPP G    PP
Sbjct: 42  PSQGPPPGGPPGAPP 56



 Score = 22.2 bits (45), Expect = 7.6
 Identities = 10/32 (31%), Positives = 10/32 (31%)
 Frame = +1

Query: 526 PXPXPXPXXPPXPGGXXGXXPPXXXPPPPXXP 621
           P P P P   P          P   PPP   P
Sbjct: 21  PGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPP 52


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.8 bits (49), Expect = 2.5
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +3

Query: 867  PPPPPPP 887
            PPPPPPP
Sbjct: 1355 PPPPPPP 1361



 Score = 23.8 bits (49), Expect = 2.5
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +1

Query: 868  PPPPPPP 888
            PPPPPPP
Sbjct: 1355 PPPPPPP 1361



 Score = 23.8 bits (49), Expect = 2.5
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +3

Query: 867  PPPPPPP 887
            PPPPPPP
Sbjct: 1356 PPPPPPP 1362



 Score = 23.8 bits (49), Expect = 2.5
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +1

Query: 868  PPPPPPP 888
            PPPPPPP
Sbjct: 1356 PPPPPPP 1362


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.314    0.154    0.557 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 256,157
Number of Sequences: 438
Number of extensions: 15081
Number of successful extensions: 45
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 33621042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)