Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP13_F_I24
(892 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||... 30 0.51
SPAC26F1.08c |||conserved protein|Schizosaccharomyces pombe|chr ... 29 0.67
SPAC637.09 |||ribonuclease H70 |Schizosaccharomyces pombe|chr 1|... 28 1.6
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|... 28 2.1
SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||... 27 2.7
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 27 3.6
SPBC2G5.06c |hmt2|cad1|sulfide-quinone oxidoreductase|Schizosacc... 26 6.3
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch... 26 6.3
>SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1260
Score = 29.9 bits (64), Expect = 0.51
Identities = 19/90 (21%), Positives = 46/90 (51%), Gaps = 1/90 (1%)
Frame = +3
Query: 297 SRELARVEDEIATLRTVLQSKIRQSSDLKRKLGI-TVWKEITEDVNQGLKNVKESQVYQK 473
++E +E++ + ++Q + +++KL +++++ E N+G +++ S ++
Sbjct: 135 AKERVVLENQFSKTAGIVQGITGEFLRVEKKLDEEALYQDLKELYNEGFRSISVSLMHSY 194
Query: 474 TESVIKTTAEKTSSIIGGITAGVSSKLGQM 563
T + + EK + IG +SSKL M
Sbjct: 195 TYPLHEEVVEKIAKRIGFTDISLSSKLTPM 224
>SPAC26F1.08c |||conserved protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 977
Score = 29.5 bits (63), Expect = 0.67
Identities = 18/68 (26%), Positives = 36/68 (52%), Gaps = 3/68 (4%)
Frame = +3
Query: 327 IATLRTVLQSKIRQSSDLKRKLGITVWKEITEDVNQGLKNV---KESQVYQKTESVIKTT 497
+ +L T+L +R +SDL + G+ +I + +N ++N ES + + SVIK
Sbjct: 176 VVSLVTILVPPMRMASDLVGQSGLDHLNKIMQSLNFSVENFFPSDESVSFSSSSSVIKRM 235
Query: 498 AEKTSSII 521
++ S++
Sbjct: 236 FKEHESVL 243
>SPAC637.09 |||ribonuclease H70 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 623
Score = 28.3 bits (60), Expect = 1.6
Identities = 30/132 (22%), Positives = 53/132 (40%)
Frame = +3
Query: 129 YFSFISHRKSFSL*NMSGVQTAEEAMSGTGVAGDIHTPDELAGLTPEQADQLRAEWSREL 308
Y SFI M G + + + AGD H+P + + +R E E+
Sbjct: 226 YESFIEDEYPLHPTVMKGEEVTQPS-GWVASAGDFHSPPINPKILAIDCEMVRTENGLEI 284
Query: 309 ARVEDEIATLRTVLQSKIRQSSDLKRKLGITVWKEITEDVNQGLKNVKESQVYQKTESVI 488
ARV + ++ S + +T + ITE + L+NV + V +S +
Sbjct: 285 ARVTIVDMKSEVIYDEFVKPESPVTDY--VTQYSGITE---EKLRNV--TTVLSDVQSYL 337
Query: 489 KTTAEKTSSIIG 524
K T + + ++G
Sbjct: 338 KKTVDNNTVLLG 349
>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1328
Score = 27.9 bits (59), Expect = 2.1
Identities = 23/101 (22%), Positives = 45/101 (44%)
Frame = +3
Query: 408 KEITEDVNQGLKNVKESQVYQKTESVIKTTAEKTSSIIGGITAGVSSKLGQMRNSESFRS 587
+E +DV++ + E +V+Q + + TA+ T S ++ V L ++ + F
Sbjct: 107 EEDFDDVDEEMLRAAEMEVFQSCQPLAVNTADTTVS-HSTSSSNVPRSLNKIHDPSRFIK 165
Query: 588 IEERVGSAYENVKGKVASRSNSTQSFDEALRDASGATSPPI 710
+ + + KVAS SN+++ + ATS I
Sbjct: 166 DNDVENRIHVSSASKVASISNTSKPNPIVSENPISATSVSI 206
>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1158
Score = 27.5 bits (58), Expect = 2.7
Identities = 16/39 (41%), Positives = 23/39 (58%)
Frame = +3
Query: 603 GSAYENVKGKVASRSNSTQSFDEALRDASGATSPPIPST 719
GS+ EN R+N++ SFD L D+S T+P I S+
Sbjct: 302 GSSIENNFLYTKRRANTSDSFDSVLSDSS--TTPTISSS 338
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 27.1 bits (57), Expect = 3.6
Identities = 29/108 (26%), Positives = 50/108 (46%), Gaps = 1/108 (0%)
Frame = +3
Query: 474 TESVIKTTAEKTSSIIGGITAGVSSKLGQMRNSESFRSIEERVGSAYENVKGKVASRSNS 653
+ S+ ++ +SS I + VSS L +S S S+ + S+ + AS S S
Sbjct: 554 SSSITTISSGISSSSIPSTFSSVSSILSSSTSSPSSTSLS--ISSSSTSSTFSSASTS-S 610
Query: 654 TQSFDEALRDASGATSPPIPSTSRCP-*AGTLSCHSTRHMSFAISPLP 794
S ++ +S S P PSTS + ++ S+ +S +IS +P
Sbjct: 611 PSSISSSISSSSTILSSPTPSTSSLMISSSSIISGSSSILSSSISTIP 658
>SPBC2G5.06c |hmt2|cad1|sulfide-quinone
oxidoreductase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 459
Score = 26.2 bits (55), Expect = 6.3
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +3
Query: 204 MSGTGVAGDIHTPDELAGLTPEQADQLRAEWSRELARVEDEIAT 335
++G G++ T ELA L P +L E+ + L E++I T
Sbjct: 88 LTGAGLSSVAKTRRELASLVPADKFKLHPEFVKSLHPRENKIVT 131
>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
Rev3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1480
Score = 26.2 bits (55), Expect = 6.3
Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Frame = +3
Query: 255 GLTPEQADQLRAE--WSRELARVEDEIATLRTVLQSKIRQSSDLKRKLGITVWKEI 416
GL E + + R+ W E+A + L+ +++SK+ SSD+ L W E+
Sbjct: 270 GLKEESSHEPRSSQHWKNEVAMKD----LLKNLIKSKLESSSDVNTPLIFDPWPEL 321
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,081,586
Number of Sequences: 5004
Number of extensions: 57422
Number of successful extensions: 195
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 195
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 448490560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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