Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_I24
         (892 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.    27   1.0  
AF395080-1|AAK97462.1|  537|Anopheles gambiae zinc finger transc...    25   4.1  

>AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.
          Length = 1133

 Score = 26.6 bits (56), Expect = 1.0
 Identities = 29/144 (20%), Positives = 60/144 (41%), Gaps = 3/144 (2%)
 Frame = +3

Query: 303 ELARVEDEIATLRTVLQS---KIRQSSDLKRKLGITVWKEITEDVNQGLKNVKESQVYQK 473
           +LA V+DE+  LRT ++    +IR    L  K   T+     +  ++  + V   + Y  
Sbjct: 327 QLAAVDDELKKLRTSIEEQEHRIRNREALVAKTDSTIDTYRADIESKKQEYVALKEAYGT 386

Query: 474 TESVIKTTAEKTSSIIGGITAGVSSKLGQMRNSESFRSIEERVGSAYENVKGKVASRSNS 653
               ++    K ++I  G+    S ++   R  +  R IE+ +     +   +V  R  +
Sbjct: 387 VRRTLQDVQAKQAAIERGM-RNASERV--TRIQKDARQIEQDLQERNRDGLSQVEQRKQA 443

Query: 654 TQSFDEALRDASGATSPPIPSTSR 725
            ++    L++ +   +  I S  R
Sbjct: 444 VETEKAQLKERNDELASMIASAQR 467


>AF395080-1|AAK97462.1|  537|Anopheles gambiae zinc finger
           transcription factor pannier protein.
          Length = 537

 Score = 24.6 bits (51), Expect = 4.1
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +2

Query: 398 HGVERDHRGRQSGFEKRQRKP 460
           HGV R    R+ G + R+RKP
Sbjct: 208 HGVNRPLAMRKDGIQTRKRKP 228


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 765,070
Number of Sequences: 2352
Number of extensions: 14051
Number of successful extensions: 51
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 51
length of database: 563,979
effective HSP length: 64
effective length of database: 413,451
effective search space used: 95920632
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)