Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_I24
         (892 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68105-1|CAA92122.2|  195|Caenorhabditis elegans Hypothetical pr...    82   5e-16
U40946-4|AAA81726.1|  414|Caenorhabditis elegans Hypothetical pr...    33   0.27 
U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical pr...    31   1.5  
AL110478-6|CAE17957.2|  952|Caenorhabditis elegans Hypothetical ...    30   1.9  
AC024812-1|AAF59552.2|  364|Caenorhabditis elegans Hypothetical ...    30   1.9  
U29381-14|ABI54346.1| 1840|Caenorhabditis elegans Hypothetical p...    30   2.6  
U29381-13|ABI54348.1| 1898|Caenorhabditis elegans Hypothetical p...    30   2.6  
U29381-12|AAM98022.3| 1671|Caenorhabditis elegans Hypothetical p...    30   2.6  
U29381-11|ABI54347.1| 1911|Caenorhabditis elegans Hypothetical p...    30   2.6  
Z93398-7|CAD90188.2| 4955|Caenorhabditis elegans Hypothetical pr...    29   3.4  
Z93398-6|CAD90187.2| 4944|Caenorhabditis elegans Hypothetical pr...    29   3.4  
Z93398-4|CAH04743.1| 4410|Caenorhabditis elegans Hypothetical pr...    29   3.4  
Z92788-7|CAD90177.2| 4955|Caenorhabditis elegans Hypothetical pr...    29   3.4  
Z92788-6|CAD90176.2| 4944|Caenorhabditis elegans Hypothetical pr...    29   3.4  
Z92788-4|CAH04711.1| 4410|Caenorhabditis elegans Hypothetical pr...    29   3.4  
Z47358-10|CAA87438.1|  507|Caenorhabditis elegans Hypothetical p...    29   3.4  
Z47356-9|CAA87420.1|  507|Caenorhabditis elegans Hypothetical pr...    29   3.4  
AL031637-4|CAD90184.2| 4955|Caenorhabditis elegans Hypothetical ...    29   3.4  
AL031637-3|CAD90183.2| 4944|Caenorhabditis elegans Hypothetical ...    29   3.4  
AL031637-2|CAH04759.1| 4410|Caenorhabditis elegans Hypothetical ...    29   3.4  
AJ505905-1|CAD44516.1| 3522|Caenorhabditis elegans VAB-10B prote...    29   3.4  
AJ505816-1|CAD44324.1| 4944|Caenorhabditis elegans VAB-10B prote...    29   3.4  
U70852-1|AAK29815.1| 2361|Caenorhabditis elegans Hypothetical pr...    29   5.9  
Z80344-1|CAB02485.1|  183|Caenorhabditis elegans Hypothetical pr...    28   7.8  

>Z68105-1|CAA92122.2|  195|Caenorhabditis elegans Hypothetical
           protein F13E6.1 protein.
          Length = 195

 Score = 82.2 bits (194), Expect = 5e-16
 Identities = 42/108 (38%), Positives = 66/108 (61%)
 Frame = +3

Query: 303 ELARVEDEIATLRTVLQSKIRQSSDLKRKLGITVWKEITEDVNQGLKNVKESQVYQKTES 482
           EL + E+EI+TL+ VL ++ + +++LKRKLG+T + E+++D+N+ LK V ++  YQKT  
Sbjct: 67  ELDKTEEEISTLKQVLSARQKHAAELKRKLGLTPFSELSQDINRSLKTVTDTDAYQKTAE 126

Query: 483 VIKTTAEKTSSIIGGITAGVSSKLGQMRNSESFRSIEERVGSAYENVK 626
           V   T++            V  K   MRNS  F+S E ++GSA  N K
Sbjct: 127 VAAATSDT-----------VKEKWNDMRNSSLFKSFESKLGSALNNAK 163


>U40946-4|AAA81726.1|  414|Caenorhabditis elegans Hypothetical
           protein W05H9.1 protein.
          Length = 414

 Score = 33.1 bits (72), Expect = 0.27
 Identities = 19/86 (22%), Positives = 45/86 (52%), Gaps = 9/86 (10%)
 Frame = +3

Query: 276 DQLRAEWSRELARVEDEIATLRTVLQSKIRQSSDLKRK---LGITVWKEITEDVNQGLKN 446
           ++ + + +  L++V D +      L+ + ++ ++ K+K     I  WKE+++ V + +++
Sbjct: 59  EETQKKLNETLSKVSDAVKQRADELEKEKQEKAEAKKKEAEAAIEKWKEVSQQVGEFVES 118

Query: 447 V------KESQVYQKTESVIKTTAEK 506
           V      KE +  QK +  +KT  +K
Sbjct: 119 VKEKKQAKEQEKQQKIDDFVKTFTDK 144


>U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical protein
            K06A9.1b protein.
          Length = 2232

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 20/47 (42%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = +3

Query: 648  NSTQSFDEALRDASGATSPPIPS-TSRCP*AGTLSCHSTRHMSFAIS 785
            +STQSF      +S A+S P+PS TS  P   T S  S+  +S  IS
Sbjct: 1394 SSTQSFSSTSEGSSKASSSPVPSQTSSTPTNPTGSTESSTLLSSTIS 1440


>AL110478-6|CAE17957.2|  952|Caenorhabditis elegans Hypothetical
           protein Y26D4A.14 protein.
          Length = 952

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
 Frame = +3

Query: 420 EDVNQGLKNVKESQVYQKTESVIKTTAEKTSSIIGGITAGVSSKL---GQMRNSESFRSI 590
           ED  + + N+K       TES IKT++ K S+I    +  VS K+   G   N +S +S 
Sbjct: 660 EDKIELVDNIKTDNTTSNTESNIKTSSIKESNIETS-SLKVSKKIEGSGNKMNKKSKKSD 718

Query: 591 EERVGSAYEN 620
           ++++  A  N
Sbjct: 719 DKKISKANNN 728


>AC024812-1|AAF59552.2|  364|Caenorhabditis elegans Hypothetical
           protein Y54E10BR.4 protein.
          Length = 364

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 32/137 (23%), Positives = 55/137 (40%), Gaps = 1/137 (0%)
 Frame = +3

Query: 264 PEQADQLRAEWSRELARVEDEIATLRTVLQSKIRQSSDLKRKLGITVWKEITEDVNQGLK 443
           P+  D+LR+  +R+L        TLR   Q+ +R   D  +  G      +  D+     
Sbjct: 35  PQILDELRSSAARKLWNTLPFEVTLREPTQTALRAVIDASKTTGDFQSLSMV-DIKMIAL 93

Query: 444 NVKESQVYQKTESVIKTTAEKTSSIIGGITAGVSS-KLGQMRNSESFRSIEERVGSAYEN 620
                + Y     V +TT +     I  ++A V    +G+         IEE   S  ++
Sbjct: 94  TYDLHRQYVAENDVAETTEDDEKKNIEDLSAKVEQVTVGENTEDTKEEEIEENEESE-DS 152

Query: 621 VKGKVASRSNSTQSFDE 671
              + +  S S++SFDE
Sbjct: 153 AVSEGSESSESSESFDE 169


>U29381-14|ABI54346.1| 1840|Caenorhabditis elegans Hypothetical
           protein F35D11.11a protein.
          Length = 1840

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = +3

Query: 267 EQADQLRAEWSRELARVEDEIATLRTVLQSKIRQSSDLKRK 389
           EQ D  RAEWS E  R+E       T LQ ++++  D+ ++
Sbjct: 867 EQNDGDRAEWSNERNRLESSKNEAVTELQERVQKLEDVVKE 907


>U29381-13|ABI54348.1| 1898|Caenorhabditis elegans Hypothetical
           protein F35D11.11c protein.
          Length = 1898

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = +3

Query: 267 EQADQLRAEWSRELARVEDEIATLRTVLQSKIRQSSDLKRK 389
           EQ D  RAEWS E  R+E       T LQ ++++  D+ ++
Sbjct: 867 EQNDGDRAEWSNERNRLESSKNEAVTELQERVQKLEDVVKE 907


>U29381-12|AAM98022.3| 1671|Caenorhabditis elegans Hypothetical
           protein F35D11.11d protein.
          Length = 1671

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = +3

Query: 267 EQADQLRAEWSRELARVEDEIATLRTVLQSKIRQSSDLKRK 389
           EQ D  RAEWS E  R+E       T LQ ++++  D+ ++
Sbjct: 627 EQNDGDRAEWSNERNRLESSKNEAVTELQERVQKLEDVVKE 667


>U29381-11|ABI54347.1| 1911|Caenorhabditis elegans Hypothetical
           protein F35D11.11b protein.
          Length = 1911

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = +3

Query: 267 EQADQLRAEWSRELARVEDEIATLRTVLQSKIRQSSDLKRK 389
           EQ D  RAEWS E  R+E       T LQ ++++  D+ ++
Sbjct: 867 EQNDGDRAEWSNERNRLESSKNEAVTELQERVQKLEDVVKE 907


>Z93398-7|CAD90188.2| 4955|Caenorhabditis elegans Hypothetical protein
            ZK1151.1c protein.
          Length = 4955

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 30/156 (19%), Positives = 63/156 (40%), Gaps = 1/156 (0%)
 Frame = +3

Query: 198  EAMSGTGVAGDIHTPDELAGLTPEQADQLRAEWSRELARVEDEIATLRTVLQSKIRQSSD 377
            EA  G G+        E+     ++ ++L A   + LA+ E +I      +      +  
Sbjct: 2728 EAALGAGIVAQ--PVFEMNRAATDELNKLAARAGKRLAQREKKITETEDEIDKLHADADQ 2785

Query: 378  LKRKLGITVWKEITEDVNQGLKNVKE-SQVYQKTESVIKTTAEKTSSIIGGITAGVSSKL 554
            +   L      E  +     L + K+ S+  ++ +  +K   EK  +        + +  
Sbjct: 2786 IVGALEAIAKDEALQGAPSQLLDPKQVSEKVRQLKESLKPVGEKMDAFNTDCKLLIKTA- 2844

Query: 555  GQMRNSESFRSIEERVGSAYENVKGKVASRSNSTQS 662
            G   +++   S+ ++VG AY +V GKV+ +  S  +
Sbjct: 2845 GPESDTKELDSLLKKVGDAYSDVVGKVSDKEMSVDA 2880


>Z93398-6|CAD90187.2| 4944|Caenorhabditis elegans Hypothetical protein
            ZK1151.1b protein.
          Length = 4944

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 30/156 (19%), Positives = 63/156 (40%), Gaps = 1/156 (0%)
 Frame = +3

Query: 198  EAMSGTGVAGDIHTPDELAGLTPEQADQLRAEWSRELARVEDEIATLRTVLQSKIRQSSD 377
            EA  G G+        E+     ++ ++L A   + LA+ E +I      +      +  
Sbjct: 2728 EAALGAGIVAQ--PVFEMNRAATDELNKLAARAGKRLAQREKKITETEDEIDKLHADADQ 2785

Query: 378  LKRKLGITVWKEITEDVNQGLKNVKE-SQVYQKTESVIKTTAEKTSSIIGGITAGVSSKL 554
            +   L      E  +     L + K+ S+  ++ +  +K   EK  +        + +  
Sbjct: 2786 IVGALEAIAKDEALQGAPSQLLDPKQVSEKVRQLKESLKPVGEKMDAFNTDCKLLIKTA- 2844

Query: 555  GQMRNSESFRSIEERVGSAYENVKGKVASRSNSTQS 662
            G   +++   S+ ++VG AY +V GKV+ +  S  +
Sbjct: 2845 GPESDTKELDSLLKKVGDAYSDVVGKVSDKEMSVDA 2880


>Z93398-4|CAH04743.1| 4410|Caenorhabditis elegans Hypothetical protein
            ZK1151.1g protein.
          Length = 4410

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 30/156 (19%), Positives = 63/156 (40%), Gaps = 1/156 (0%)
 Frame = +3

Query: 198  EAMSGTGVAGDIHTPDELAGLTPEQADQLRAEWSRELARVEDEIATLRTVLQSKIRQSSD 377
            EA  G G+        E+     ++ ++L A   + LA+ E +I      +      +  
Sbjct: 2183 EAALGAGIVAQ--PVFEMNRAATDELNKLAARAGKRLAQREKKITETEDEIDKLHADADQ 2240

Query: 378  LKRKLGITVWKEITEDVNQGLKNVKE-SQVYQKTESVIKTTAEKTSSIIGGITAGVSSKL 554
            +   L      E  +     L + K+ S+  ++ +  +K   EK  +        + +  
Sbjct: 2241 IVGALEAIAKDEALQGAPSQLLDPKQVSEKVRQLKESLKPVGEKMDAFNTDCKLLIKTA- 2299

Query: 555  GQMRNSESFRSIEERVGSAYENVKGKVASRSNSTQS 662
            G   +++   S+ ++VG AY +V GKV+ +  S  +
Sbjct: 2300 GPESDTKELDSLLKKVGDAYSDVVGKVSDKEMSVDA 2335


>Z92788-7|CAD90177.2| 4955|Caenorhabditis elegans Hypothetical protein
            ZK1151.1c protein.
          Length = 4955

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 30/156 (19%), Positives = 63/156 (40%), Gaps = 1/156 (0%)
 Frame = +3

Query: 198  EAMSGTGVAGDIHTPDELAGLTPEQADQLRAEWSRELARVEDEIATLRTVLQSKIRQSSD 377
            EA  G G+        E+     ++ ++L A   + LA+ E +I      +      +  
Sbjct: 2728 EAALGAGIVAQ--PVFEMNRAATDELNKLAARAGKRLAQREKKITETEDEIDKLHADADQ 2785

Query: 378  LKRKLGITVWKEITEDVNQGLKNVKE-SQVYQKTESVIKTTAEKTSSIIGGITAGVSSKL 554
            +   L      E  +     L + K+ S+  ++ +  +K   EK  +        + +  
Sbjct: 2786 IVGALEAIAKDEALQGAPSQLLDPKQVSEKVRQLKESLKPVGEKMDAFNTDCKLLIKTA- 2844

Query: 555  GQMRNSESFRSIEERVGSAYENVKGKVASRSNSTQS 662
            G   +++   S+ ++VG AY +V GKV+ +  S  +
Sbjct: 2845 GPESDTKELDSLLKKVGDAYSDVVGKVSDKEMSVDA 2880


>Z92788-6|CAD90176.2| 4944|Caenorhabditis elegans Hypothetical protein
            ZK1151.1b protein.
          Length = 4944

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 30/156 (19%), Positives = 63/156 (40%), Gaps = 1/156 (0%)
 Frame = +3

Query: 198  EAMSGTGVAGDIHTPDELAGLTPEQADQLRAEWSRELARVEDEIATLRTVLQSKIRQSSD 377
            EA  G G+        E+     ++ ++L A   + LA+ E +I      +      +  
Sbjct: 2728 EAALGAGIVAQ--PVFEMNRAATDELNKLAARAGKRLAQREKKITETEDEIDKLHADADQ 2785

Query: 378  LKRKLGITVWKEITEDVNQGLKNVKE-SQVYQKTESVIKTTAEKTSSIIGGITAGVSSKL 554
            +   L      E  +     L + K+ S+  ++ +  +K   EK  +        + +  
Sbjct: 2786 IVGALEAIAKDEALQGAPSQLLDPKQVSEKVRQLKESLKPVGEKMDAFNTDCKLLIKTA- 2844

Query: 555  GQMRNSESFRSIEERVGSAYENVKGKVASRSNSTQS 662
            G   +++   S+ ++VG AY +V GKV+ +  S  +
Sbjct: 2845 GPESDTKELDSLLKKVGDAYSDVVGKVSDKEMSVDA 2880


>Z92788-4|CAH04711.1| 4410|Caenorhabditis elegans Hypothetical protein
            ZK1151.1g protein.
          Length = 4410

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 30/156 (19%), Positives = 63/156 (40%), Gaps = 1/156 (0%)
 Frame = +3

Query: 198  EAMSGTGVAGDIHTPDELAGLTPEQADQLRAEWSRELARVEDEIATLRTVLQSKIRQSSD 377
            EA  G G+        E+     ++ ++L A   + LA+ E +I      +      +  
Sbjct: 2183 EAALGAGIVAQ--PVFEMNRAATDELNKLAARAGKRLAQREKKITETEDEIDKLHADADQ 2240

Query: 378  LKRKLGITVWKEITEDVNQGLKNVKE-SQVYQKTESVIKTTAEKTSSIIGGITAGVSSKL 554
            +   L      E  +     L + K+ S+  ++ +  +K   EK  +        + +  
Sbjct: 2241 IVGALEAIAKDEALQGAPSQLLDPKQVSEKVRQLKESLKPVGEKMDAFNTDCKLLIKTA- 2299

Query: 555  GQMRNSESFRSIEERVGSAYENVKGKVASRSNSTQS 662
            G   +++   S+ ++VG AY +V GKV+ +  S  +
Sbjct: 2300 GPESDTKELDSLLKKVGDAYSDVVGKVSDKEMSVDA 2335


>Z47358-10|CAA87438.1|  507|Caenorhabditis elegans Hypothetical
           protein ZK1307.8 protein.
          Length = 507

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
 Frame = +3

Query: 192 AEEAMSGTGVAGDIHTPDELAGLTPEQADQLR--AEWSRELARVEDEIATLRTVLQSKIR 365
           AEE       + DI  PDE     P+   +++   E +RE  R+ DE+ T    L +KIR
Sbjct: 316 AEEDRHDAEGSEDIAHPDEDDEKMPDYPPEVQQLTEKAREARRLFDEVNTKVQDLDAKIR 375

Query: 366 QSSD 377
           ++ D
Sbjct: 376 EAED 379


>Z47356-9|CAA87420.1|  507|Caenorhabditis elegans Hypothetical
           protein ZK1307.8 protein.
          Length = 507

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
 Frame = +3

Query: 192 AEEAMSGTGVAGDIHTPDELAGLTPEQADQLR--AEWSRELARVEDEIATLRTVLQSKIR 365
           AEE       + DI  PDE     P+   +++   E +RE  R+ DE+ T    L +KIR
Sbjct: 316 AEEDRHDAEGSEDIAHPDEDDEKMPDYPPEVQQLTEKAREARRLFDEVNTKVQDLDAKIR 375

Query: 366 QSSD 377
           ++ D
Sbjct: 376 EAED 379


>AL031637-4|CAD90184.2| 4955|Caenorhabditis elegans Hypothetical
            protein ZK1151.1c protein.
          Length = 4955

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 30/156 (19%), Positives = 63/156 (40%), Gaps = 1/156 (0%)
 Frame = +3

Query: 198  EAMSGTGVAGDIHTPDELAGLTPEQADQLRAEWSRELARVEDEIATLRTVLQSKIRQSSD 377
            EA  G G+        E+     ++ ++L A   + LA+ E +I      +      +  
Sbjct: 2728 EAALGAGIVAQ--PVFEMNRAATDELNKLAARAGKRLAQREKKITETEDEIDKLHADADQ 2785

Query: 378  LKRKLGITVWKEITEDVNQGLKNVKE-SQVYQKTESVIKTTAEKTSSIIGGITAGVSSKL 554
            +   L      E  +     L + K+ S+  ++ +  +K   EK  +        + +  
Sbjct: 2786 IVGALEAIAKDEALQGAPSQLLDPKQVSEKVRQLKESLKPVGEKMDAFNTDCKLLIKTA- 2844

Query: 555  GQMRNSESFRSIEERVGSAYENVKGKVASRSNSTQS 662
            G   +++   S+ ++VG AY +V GKV+ +  S  +
Sbjct: 2845 GPESDTKELDSLLKKVGDAYSDVVGKVSDKEMSVDA 2880


>AL031637-3|CAD90183.2| 4944|Caenorhabditis elegans Hypothetical
            protein ZK1151.1b protein.
          Length = 4944

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 30/156 (19%), Positives = 63/156 (40%), Gaps = 1/156 (0%)
 Frame = +3

Query: 198  EAMSGTGVAGDIHTPDELAGLTPEQADQLRAEWSRELARVEDEIATLRTVLQSKIRQSSD 377
            EA  G G+        E+     ++ ++L A   + LA+ E +I      +      +  
Sbjct: 2728 EAALGAGIVAQ--PVFEMNRAATDELNKLAARAGKRLAQREKKITETEDEIDKLHADADQ 2785

Query: 378  LKRKLGITVWKEITEDVNQGLKNVKE-SQVYQKTESVIKTTAEKTSSIIGGITAGVSSKL 554
            +   L      E  +     L + K+ S+  ++ +  +K   EK  +        + +  
Sbjct: 2786 IVGALEAIAKDEALQGAPSQLLDPKQVSEKVRQLKESLKPVGEKMDAFNTDCKLLIKTA- 2844

Query: 555  GQMRNSESFRSIEERVGSAYENVKGKVASRSNSTQS 662
            G   +++   S+ ++VG AY +V GKV+ +  S  +
Sbjct: 2845 GPESDTKELDSLLKKVGDAYSDVVGKVSDKEMSVDA 2880


>AL031637-2|CAH04759.1| 4410|Caenorhabditis elegans Hypothetical
            protein ZK1151.1g protein.
          Length = 4410

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 30/156 (19%), Positives = 63/156 (40%), Gaps = 1/156 (0%)
 Frame = +3

Query: 198  EAMSGTGVAGDIHTPDELAGLTPEQADQLRAEWSRELARVEDEIATLRTVLQSKIRQSSD 377
            EA  G G+        E+     ++ ++L A   + LA+ E +I      +      +  
Sbjct: 2183 EAALGAGIVAQ--PVFEMNRAATDELNKLAARAGKRLAQREKKITETEDEIDKLHADADQ 2240

Query: 378  LKRKLGITVWKEITEDVNQGLKNVKE-SQVYQKTESVIKTTAEKTSSIIGGITAGVSSKL 554
            +   L      E  +     L + K+ S+  ++ +  +K   EK  +        + +  
Sbjct: 2241 IVGALEAIAKDEALQGAPSQLLDPKQVSEKVRQLKESLKPVGEKMDAFNTDCKLLIKTA- 2299

Query: 555  GQMRNSESFRSIEERVGSAYENVKGKVASRSNSTQS 662
            G   +++   S+ ++VG AY +V GKV+ +  S  +
Sbjct: 2300 GPESDTKELDSLLKKVGDAYSDVVGKVSDKEMSVDA 2335


>AJ505905-1|CAD44516.1| 3522|Caenorhabditis elegans VAB-10B protein
            protein.
          Length = 3522

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 30/156 (19%), Positives = 63/156 (40%), Gaps = 1/156 (0%)
 Frame = +3

Query: 198  EAMSGTGVAGDIHTPDELAGLTPEQADQLRAEWSRELARVEDEIATLRTVLQSKIRQSSD 377
            EA  G G+        E+     ++ ++L A   + LA+ E +I      +      +  
Sbjct: 2728 EAALGAGIVAQ--PVFEMNRAATDELNKLAARAGKRLAQREKKITETEDEIDKLHADADQ 2785

Query: 378  LKRKLGITVWKEITEDVNQGLKNVKE-SQVYQKTESVIKTTAEKTSSIIGGITAGVSSKL 554
            +   L      E  +     L + K+ S+  ++ +  +K   EK  +        + +  
Sbjct: 2786 IVGALEAIAKDEALQGAPSQLLDPKQVSEKVRQLKESLKPVGEKMDAFNTDCKLLIKTA- 2844

Query: 555  GQMRNSESFRSIEERVGSAYENVKGKVASRSNSTQS 662
            G   +++   S+ ++VG AY +V GKV+ +  S  +
Sbjct: 2845 GPESDTKELDSLLKKVGDAYSDVVGKVSDKEMSVDA 2880


>AJ505816-1|CAD44324.1| 4944|Caenorhabditis elegans VAB-10B protein
            protein.
          Length = 4944

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 30/156 (19%), Positives = 63/156 (40%), Gaps = 1/156 (0%)
 Frame = +3

Query: 198  EAMSGTGVAGDIHTPDELAGLTPEQADQLRAEWSRELARVEDEIATLRTVLQSKIRQSSD 377
            EA  G G+        E+     ++ ++L A   + LA+ E +I      +      +  
Sbjct: 2728 EAALGAGIVAQ--PVFEMNRAATDELNKLAARAGKRLAQREKKITETEDEIDKLHADADQ 2785

Query: 378  LKRKLGITVWKEITEDVNQGLKNVKE-SQVYQKTESVIKTTAEKTSSIIGGITAGVSSKL 554
            +   L      E  +     L + K+ S+  ++ +  +K   EK  +        + +  
Sbjct: 2786 IVGALEAIAKDEALQGAPSQLLDPKQVSEKVRQLKESLKPVGEKMDAFNTDCKLLIKTA- 2844

Query: 555  GQMRNSESFRSIEERVGSAYENVKGKVASRSNSTQS 662
            G   +++   S+ ++VG AY +V GKV+ +  S  +
Sbjct: 2845 GPESDTKELDSLLKKVGDAYSDVVGKVSDKEMSVDA 2880


>U70852-1|AAK29815.1| 2361|Caenorhabditis elegans Hypothetical
           protein F45E4.4 protein.
          Length = 2361

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 26/91 (28%), Positives = 41/91 (45%), Gaps = 4/91 (4%)
 Frame = +3

Query: 336 LRTVLQSKIRQSSDLKRKLGITVWKEITEDVNQ-GLKNV--KESQ-VYQKTESVIKTTAE 503
           L T  +  IRQ S +  K+   +  E ++  +  GLKN   K +Q V   T+SVIK    
Sbjct: 346 LTTEEKEHIRQMSLMAEKMDEEILDEQSKPKSTFGLKNFFGKATQSVMHATDSVIKNVQN 405

Query: 504 KTSSIIGGITAGVSSKLGQMRNSESFRSIEE 596
           ++   + G+T      + Q   S    S +E
Sbjct: 406 QSKQSLSGLTQEELDNIAQATESAQQESKQE 436


>Z80344-1|CAB02485.1|  183|Caenorhabditis elegans Hypothetical
           protein F15D4.2 protein.
          Length = 183

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 27/109 (24%), Positives = 43/109 (39%), Gaps = 2/109 (1%)
 Frame = +3

Query: 420 EDVNQGLKNVKESQVYQKTESVIKTTAEKTSSIIGGITAGVSSKLGQMRNSESFRSIEER 599
           EDV Q L    +    ++ ++V+     + SS        V    G+   SES    E  
Sbjct: 52  EDVKQLLLAEIDGMSKKRLDAVLAGETLEESSSSEDEEEQVIGSAGESEKSESPEIPEPE 111

Query: 600 VGSAYENVKGKVASRSNSTQSFDEALRDASGAT--SPPIPSTSRCP*AG 740
                + V+   AS ++     D  +RD  G T  +PP P + + P  G
Sbjct: 112 AKMEEQAVEAAEASEASDDGREDGEIRDDQGNTTSTPPDPGSPKSPEKG 160


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,068,462
Number of Sequences: 27780
Number of extensions: 323834
Number of successful extensions: 1143
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 1085
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1141
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2255353870
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)