Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_I24
         (892 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    25   0.70 
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    25   1.2  
AB083010-1|BAC54131.1|  132|Apis mellifera fatty acid binding pr...    25   1.2  
M29489-1|AAA27724.1|  109|Apis mellifera protein ( Bee homeobox-...    23   3.7  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    22   6.5  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    22   6.5  
DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.              22   8.6  

>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 25.4 bits (53), Expect = 0.70
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = +3

Query: 288 AEWSRELARVEDEIATLRTVL 350
           +E  R+L R+ED++ATLR  L
Sbjct: 559 SEKFRKLIRIEDDVATLRMKL 579


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +3

Query: 288 AEWSRELARVEDEIATLRTVL 350
           +E  R+L R+ED +ATLR  L
Sbjct: 612 SEKFRKLIRIEDNVATLRMKL 632


>AB083010-1|BAC54131.1|  132|Apis mellifera fatty acid binding
           protein protein.
          Length = 132

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 20/82 (24%), Positives = 34/82 (41%), Gaps = 5/82 (6%)
 Frame = +3

Query: 378 LKRKLGITVWKEITEDVNQGLKNVKESQVYQKTESVIKTTAEKTSSIIGG-----ITAGV 542
           + RK+G +V   +    N GL  +K +  ++ TE   K   E     + G     +    
Sbjct: 29  MTRKVGSSVSPVVELTENNGLYTLKTTSPFKNTEIKFKLGEEFEEETVDGRKVKSVCTLD 88

Query: 543 SSKLGQMRNSESFRSIEERVGS 608
            +KL Q++  E   +IE    S
Sbjct: 89  GNKLIQVQKGEKQTTIEREFSS 110


>M29489-1|AAA27724.1|  109|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone E60. ).
          Length = 109

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 16/48 (33%), Positives = 24/48 (50%)
 Frame = +3

Query: 255 GLTPEQADQLRAEWSRELARVEDEIATLRTVLQSKIRQSSDLKRKLGI 398
           G TPE+     A    +LAR++ E A  R + +   R+   L R LG+
Sbjct: 15  GGTPEEKRPRTAFSGEQLARLKREFAENRYLTE---RRRQQLSRDLGL 59


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 13/42 (30%), Positives = 17/42 (40%)
 Frame = +3

Query: 699 SPPIPSTSRCP*AGTLSCHSTRHMSFAISPLPYRARAPRXWQ 824
           SPP  S SRCP     SC   R ++     L    +    W+
Sbjct: 471 SPPAFSHSRCPPEIHKSCICVRFIAEHTKMLEDSTKVKEDWK 512


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 13/42 (30%), Positives = 17/42 (40%)
 Frame = +3

Query: 699 SPPIPSTSRCP*AGTLSCHSTRHMSFAISPLPYRARAPRXWQ 824
           SPP  S SRCP     SC   R ++     L    +    W+
Sbjct: 471 SPPAFSHSRCPPEIHKSCICVRFIAEHTKMLEDSTKVKEDWK 512


>DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.
          Length = 120

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 11/31 (35%), Positives = 14/31 (45%)
 Frame = +3

Query: 675 LRDASGATSPPIPSTSRCP*AGTLSCHSTRH 767
           L+DA G  S P+     CP  G  +C    H
Sbjct: 58  LKDADGRVSCPVLRAYTCPICG--ACGDIAH 86


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 201,795
Number of Sequences: 438
Number of extensions: 3866
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28783482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)