Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_I23
         (898 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL359392-1|CAI40208.2| 1055|Homo sapiens LIM domain 7 protein.         31   5.7  
AL137782-2|CAI40006.2| 1055|Homo sapiens LIM domain 7 protein.         31   5.7  
AL137121-1|CAI39479.2| 1055|Homo sapiens LIM domain 7 protein.         31   5.7  
AF174600-1|AAF04521.1|  255|Homo sapiens F-box protein Fbx20 pro...    31   5.7  
CR457370-1|CAG33651.1|  435|Homo sapiens FLJ23375 protein.             31   7.5  
BC009981-1|AAH09981.2|  643|Homo sapiens transmembrane protein 6...    31   7.5  
AK027028-1|BAB15630.1|  435|Homo sapiens protein ( Homo sapiens ...    31   7.5  

>AL359392-1|CAI40208.2| 1055|Homo sapiens LIM domain 7 protein.
          Length = 1055

 Score = 31.1 bits (67), Expect = 5.7
 Identities = 15/44 (34%), Positives = 19/44 (43%)
 Frame = +2

Query: 608 PDRTIKIPGVSPWKLPRALSCFRPCRLPDTCPPFSLREAWRFLI 739
           PDR   +P   PW LP  +     C L  TCP      + R L+
Sbjct: 210 PDRYHPVPFPEPWTLPPEIQAKFLCVLERTCPSKEKSNSCRILV 253


>AL137782-2|CAI40006.2| 1055|Homo sapiens LIM domain 7 protein.
          Length = 1055

 Score = 31.1 bits (67), Expect = 5.7
 Identities = 15/44 (34%), Positives = 19/44 (43%)
 Frame = +2

Query: 608 PDRTIKIPGVSPWKLPRALSCFRPCRLPDTCPPFSLREAWRFLI 739
           PDR   +P   PW LP  +     C L  TCP      + R L+
Sbjct: 210 PDRYHPVPFPEPWTLPPEIQAKFLCVLERTCPSKEKSNSCRILV 253


>AL137121-1|CAI39479.2| 1055|Homo sapiens LIM domain 7 protein.
          Length = 1055

 Score = 31.1 bits (67), Expect = 5.7
 Identities = 15/44 (34%), Positives = 19/44 (43%)
 Frame = +2

Query: 608 PDRTIKIPGVSPWKLPRALSCFRPCRLPDTCPPFSLREAWRFLI 739
           PDR   +P   PW LP  +     C L  TCP      + R L+
Sbjct: 210 PDRYHPVPFPEPWTLPPEIQAKFLCVLERTCPSKEKSNSCRILV 253


>AF174600-1|AAF04521.1|  255|Homo sapiens F-box protein Fbx20
           protein.
          Length = 255

 Score = 31.1 bits (67), Expect = 5.7
 Identities = 15/44 (34%), Positives = 19/44 (43%)
 Frame = +2

Query: 608 PDRTIKIPGVSPWKLPRALSCFRPCRLPDTCPPFSLREAWRFLI 739
           PDR   +P   PW LP  +     C L  TCP      + R L+
Sbjct: 84  PDRYHPVPFPEPWTLPPEIQAKFLCVLERTCPSKEKSNSCRILV 127


>CR457370-1|CAG33651.1|  435|Homo sapiens FLJ23375 protein.
          Length = 435

 Score = 30.7 bits (66), Expect = 7.5
 Identities = 21/48 (43%), Positives = 25/48 (52%)
 Frame = -3

Query: 239 LFIAAYNGYK*SNSITNFTNKAFFSLHSSCGLSKLINVFYHVWIQLTL 96
           L I  Y GY      + F N   FSLH    LSK IN+FY+  + LTL
Sbjct: 240 LIIFRYRGYPELKEPSGFINLTSFSLHV---LSK-INIFYYSVLLLTL 283


>BC009981-1|AAH09981.2|  643|Homo sapiens transmembrane protein 62
           protein.
          Length = 643

 Score = 30.7 bits (66), Expect = 7.5
 Identities = 21/48 (43%), Positives = 25/48 (52%)
 Frame = -3

Query: 239 LFIAAYNGYK*SNSITNFTNKAFFSLHSSCGLSKLINVFYHVWIQLTL 96
           L I  Y GY      + F N   FSLH    LSK IN+FY+  + LTL
Sbjct: 448 LIIFRYRGYPELKEPSGFINLTSFSLHV---LSK-INIFYYSVLLLTL 491


>AK027028-1|BAB15630.1|  435|Homo sapiens protein ( Homo sapiens
           cDNA: FLJ23375 fis, clone HEP16206. ).
          Length = 435

 Score = 30.7 bits (66), Expect = 7.5
 Identities = 21/48 (43%), Positives = 25/48 (52%)
 Frame = -3

Query: 239 LFIAAYNGYK*SNSITNFTNKAFFSLHSSCGLSKLINVFYHVWIQLTL 96
           L I  Y GY      + F N   FSLH    LSK IN+FY+  + LTL
Sbjct: 240 LIIFRYRGYPELKEPSGFINLTSFSLHV---LSK-INIFYYSVLLLTL 283


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 120,672,000
Number of Sequences: 237096
Number of extensions: 2565220
Number of successful extensions: 11515
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11214
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11513
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11548247776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)