Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP13_F_I22
(970 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 32 0.71
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 32 0.71
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 32 0.71
AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ... 32 0.71
U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical pr... 30 2.8
AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical ... 30 2.8
Z68215-7|CAA92453.1| 289|Caenorhabditis elegans Hypothetical pr... 29 3.8
AL022716-5|CAB97232.1| 291|Caenorhabditis elegans Hypothetical ... 29 5.0
Z78013-1|CAB01425.3| 1140|Caenorhabditis elegans Hypothetical pr... 29 6.6
Z73424-3|CAA97781.2| 1150|Caenorhabditis elegans Hypothetical pr... 29 6.6
Z68008-4|CAA92000.4| 1137|Caenorhabditis elegans Hypothetical pr... 29 6.6
U58755-7|AAB00696.1| 136|Caenorhabditis elegans Hypothetical pr... 29 6.6
AF047659-10|AAC04430.1| 798|Caenorhabditis elegans Hypothetical... 28 8.7
AF003151-19|AAK18922.1| 988|Caenorhabditis elegans Hypothetical... 28 8.7
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 31.9 bits (69), Expect = 0.71
Identities = 20/54 (37%), Positives = 20/54 (37%), Gaps = 1/54 (1%)
Frame = +1
Query: 805 GXPXXPLFPPFGGXXGXFS-LXPPRPXGVXSXSXXXGPXPPPXXXXCFSPXPPP 963
G P P PP GG PP P G P PPP C P PPP
Sbjct: 724 GGPPPP--PPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPP 775
Score = 28.3 bits (60), Expect = 8.7
Identities = 19/53 (35%), Positives = 19/53 (35%)
Frame = +1
Query: 805 GXPXXPLFPPFGGXXGXFSLXPPRPXGVXSXSXXXGPXPPPXXXXCFSPXPPP 963
G P P PP GG S PP P P PPP P PPP
Sbjct: 740 GGPPPP--PPPGGLP-PISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPP 789
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 31.9 bits (69), Expect = 0.71
Identities = 20/54 (37%), Positives = 20/54 (37%), Gaps = 1/54 (1%)
Frame = +1
Query: 805 GXPXXPLFPPFGGXXGXFS-LXPPRPXGVXSXSXXXGPXPPPXXXXCFSPXPPP 963
G P P PP GG PP P G P PPP C P PPP
Sbjct: 724 GGPPPP--PPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPP 775
Score = 28.3 bits (60), Expect = 8.7
Identities = 19/53 (35%), Positives = 19/53 (35%)
Frame = +1
Query: 805 GXPXXPLFPPFGGXXGXFSLXPPRPXGVXSXSXXXGPXPPPXXXXCFSPXPPP 963
G P P PP GG S PP P P PPP P PPP
Sbjct: 740 GGPPPP--PPPGGLP-PISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPP 789
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 31.9 bits (69), Expect = 0.71
Identities = 20/54 (37%), Positives = 20/54 (37%), Gaps = 1/54 (1%)
Frame = +1
Query: 805 GXPXXPLFPPFGGXXGXFS-LXPPRPXGVXSXSXXXGPXPPPXXXXCFSPXPPP 963
G P P PP GG PP P G P PPP C P PPP
Sbjct: 307 GGPPPP--PPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPP 358
Score = 28.3 bits (60), Expect = 8.7
Identities = 19/53 (35%), Positives = 19/53 (35%)
Frame = +1
Query: 805 GXPXXPLFPPFGGXXGXFSLXPPRPXGVXSXSXXXGPXPPPXXXXCFSPXPPP 963
G P P PP GG S PP P P PPP P PPP
Sbjct: 323 GGPPPP--PPPGGLP-PISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPP 372
>AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical
protein F59E12.9 protein.
Length = 1621
Score = 31.9 bits (69), Expect = 0.71
Identities = 23/59 (38%), Positives = 25/59 (42%), Gaps = 4/59 (6%)
Frame = +1
Query: 799 SRGXPXXPLFPPFGGXXGXFSLXPPRPXGVXSXSXXXGPXP----PPXXXXCFSPXPPP 963
+RG P L PP GG G + PP P G S GP P PP P PPP
Sbjct: 1551 NRGPPMGGLPPPHGGMNG-WRGGPPPPRG---GSHCQGPPPLMGGPPPRLGMPPPGPPP 1605
>U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical
protein R04E5.8a protein.
Length = 997
Score = 29.9 bits (64), Expect = 2.8
Identities = 14/37 (37%), Positives = 16/37 (43%)
Frame = +2
Query: 464 PPPXXPPPXXRLGXXFSPPPXXXXRFPPNSGVXPGKT 574
PPP PP R SPPP PP+ P +T
Sbjct: 138 PPPPPPPRVPRTPPPRSPPPRRPPMTPPSPQRRPPRT 174
>AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical
protein Y63D3A.5 protein.
Length = 486
Score = 29.9 bits (64), Expect = 2.8
Identities = 19/56 (33%), Positives = 23/56 (41%), Gaps = 1/56 (1%)
Frame = +1
Query: 802 RGXPXXPLFPPFGGXX-GXFSLXPPRPXGVXSXSXXXGPXPPPXXXXCFSPXPPPR 966
+G P PP GG G F PP+ S GP PPP + PPP+
Sbjct: 329 QGFGAPPQGPPQGGPPQGSFGAPPPQQFHAPSPQSFGGP-PPPVSSAPGNFAPPPQ 383
>Z68215-7|CAA92453.1| 289|Caenorhabditis elegans Hypothetical
protein C53B4.5 protein.
Length = 289
Score = 29.5 bits (63), Expect = 3.8
Identities = 18/45 (40%), Positives = 18/45 (40%), Gaps = 2/45 (4%)
Frame = -3
Query: 923 GGXGPXXXEXEXTPXGRGGXR-EKXPXXPPX-GGKRGXXGXPREN 795
G GP P G G K P PP GGK G G P EN
Sbjct: 153 GNKGPLGPPGPPGPEGPNGTAGNKGPAGPPGPGGKPGPAGPPGEN 197
>AL022716-5|CAB97232.1| 291|Caenorhabditis elegans Hypothetical
protein C24F3.6 protein.
Length = 291
Score = 29.1 bits (62), Expect = 5.0
Identities = 18/45 (40%), Positives = 18/45 (40%), Gaps = 2/45 (4%)
Frame = -3
Query: 923 GGXGPXXXEXEXTPXGRGGXR-EKXPXXPPX-GGKRGXXGXPREN 795
G GP P G G K P PP GGK G G P EN
Sbjct: 155 GNKGPLGPPGPPGPEGPNGEPGNKGPAGPPGPGGKPGPAGPPGEN 199
>Z78013-1|CAB01425.3| 1140|Caenorhabditis elegans Hypothetical
protein F15B9.4 protein.
Length = 1140
Score = 28.7 bits (61), Expect = 6.6
Identities = 22/63 (34%), Positives = 23/63 (36%), Gaps = 6/63 (9%)
Frame = +1
Query: 799 SRGXPXXPLFPPFGGXXGXFSLXPPRPXGVXS------XSXXXGPXPPPXXXXCFSPXPP 960
S G P P PP G G PP P + S GP PPP P PP
Sbjct: 532 STGAPTPPPPPPVGMANGGPPPPPPLPLDLLKGAVAGLKSVPGGPPPPP-------PPPP 584
Query: 961 PRF 969
P F
Sbjct: 585 PSF 587
>Z73424-3|CAA97781.2| 1150|Caenorhabditis elegans Hypothetical
protein C44B9.4 protein.
Length = 1150
Score = 28.7 bits (61), Expect = 6.6
Identities = 14/28 (50%), Positives = 16/28 (57%)
Frame = -1
Query: 526 PXXXGKRXPQPXXRGRGXRGXGNGXGAQ 443
P KR PQP RGRG RG G G++
Sbjct: 858 PKQQRKRNPQPVGRGRG-RGGGRPRGSR 884
>Z68008-4|CAA92000.4| 1137|Caenorhabditis elegans Hypothetical
protein R08B4.1a protein.
Length = 1137
Score = 28.7 bits (61), Expect = 6.6
Identities = 13/31 (41%), Positives = 13/31 (41%)
Frame = -2
Query: 555 PEFGGNRXXXXGGGENXXPNRXXGGGXXGGG 463
P GG GGG N GGG GGG
Sbjct: 777 PTLGGPTGSSGGGGGGSNSNSGGGGGNGGGG 807
>U58755-7|AAB00696.1| 136|Caenorhabditis elegans Hypothetical
protein C34D4.11 protein.
Length = 136
Score = 28.7 bits (61), Expect = 6.6
Identities = 13/28 (46%), Positives = 13/28 (46%)
Frame = -2
Query: 546 GGNRXXXXGGGENXXPNRXXGGGXXGGG 463
GGN GGG R GGG GGG
Sbjct: 87 GGNGGGGRGGGGGGGGGRGGGGGGRGGG 114
>AF047659-10|AAC04430.1| 798|Caenorhabditis elegans Hypothetical
protein K07H8.10 protein.
Length = 798
Score = 28.3 bits (60), Expect = 8.7
Identities = 29/104 (27%), Positives = 33/104 (31%), Gaps = 1/104 (0%)
Frame = -3
Query: 965 RGGGX-GEKQXXXXGGGXGPXXXEXEXTPXGRGGXREKXPXXPPXGGKRGXXGXPRENRQ 789
RGGG G + GG G RGG R P GG RG R
Sbjct: 82 RGGGFRGGDRGGFRGGDRGGSPWRGGDRGNFRGGDRGGSPWR---GGDRGVAN---RGRG 135
Query: 788 XXXXXXXXXXXGVXXGGNXGGFLXRARXGXXXXPXRGAEFWEAR 657
GG GGF R R G P G +++R
Sbjct: 136 DFSGGSRGGNKFSPRGGGRGGFTPRGRGGNDFSPRGGRGNFQSR 179
>AF003151-19|AAK18922.1| 988|Caenorhabditis elegans Hypothetical
protein D1007.7 protein.
Length = 988
Score = 28.3 bits (60), Expect = 8.7
Identities = 17/54 (31%), Positives = 21/54 (38%), Gaps = 1/54 (1%)
Frame = +1
Query: 811 PXXPLFPPFGGXXGXFSLXPPRPXGVXSXSXXXGPXPPPXXXXCFSP-XPPPRF 969
P P +PP G + PP P G+ PPP F+ PPP F
Sbjct: 710 PGIPGYPPAPPPPG---VGPPPPQGIPPMGFDPNKPPPPMFQQGFNAGAPPPPF 760
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,283,221
Number of Sequences: 27780
Number of extensions: 268436
Number of successful extensions: 1256
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 448
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1083
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2510937120
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -