Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_I21
         (859 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032644-3|CAA21668.1|  215|Caenorhabditis elegans Hypothetical ...    54   2e-07
AL032644-2|CAA21667.1|  199|Caenorhabditis elegans Hypothetical ...    52   7e-07
U55374-7|AAP82641.1|  286|Caenorhabditis elegans Uncoordinated p...    30   1.8  
U55374-6|AAM69092.1| 1926|Caenorhabditis elegans Uncoordinated p...    30   1.8  
U55374-5|AAP82640.2| 2027|Caenorhabditis elegans Uncoordinated p...    30   1.8  
AY264781-1|AAP13107.1| 2027|Caenorhabditis elegans high voltage ...    30   1.8  
U53341-1|AAC69110.3|  727|Caenorhabditis elegans Hypothetical pr...    29   3.2  
AF106575-6|AAC78175.2|  244|Caenorhabditis elegans Hypothetical ...    29   3.2  

>AL032644-3|CAA21668.1|  215|Caenorhabditis elegans Hypothetical
           protein Y51H1A.3b protein.
          Length = 215

 Score = 53.6 bits (123), Expect = 2e-07
 Identities = 40/123 (32%), Positives = 59/123 (47%), Gaps = 7/123 (5%)
 Frame = +2

Query: 62  VKMSSLLKRALFNNSQSIRKTAALFC---NATRNHWNYQ-YQPGPYPKTPEERAAAAKKY 229
           V  S+L K     NS  I++  + F      T + W  + ++P   P   EER AAA KY
Sbjct: 14  VSFSALKKWIFLPNSTKIKEKRSSFPVRGPLTFDGWYPRDHKPSAPPTNEEERRAAAVKY 73

Query: 230 GMTVEEYTPYPED---MGYGDYPKLPDIGEDSKDPHYPYDNPELKRNFNEPLHATAEIFG 400
           G+  E+Y    +D      GDYP L  I  D KDP+  + + + +RN+ E +      + 
Sbjct: 74  GLRPEDYQSMDKDDVIKFAGDYPDLGVITYDHKDPYEAWTDRQNRRNWGELVPIDMMRYR 133

Query: 401 GDR 409
           GDR
Sbjct: 134 GDR 136


>AL032644-2|CAA21667.1|  199|Caenorhabditis elegans Hypothetical
           protein Y51H1A.3a protein.
          Length = 199

 Score = 51.6 bits (118), Expect = 7e-07
 Identities = 30/83 (36%), Positives = 43/83 (51%), Gaps = 3/83 (3%)
 Frame = +2

Query: 170 YQPGPYPKTPEERAAAAKKYGMTVEEYTPYPED---MGYGDYPKLPDIGEDSKDPHYPYD 340
           ++P   P   EER AAA KYG+  E+Y    +D      GDYP L  I  D KDP+  + 
Sbjct: 38  HKPSAPPTNEEERRAAAVKYGLRPEDYQSMDKDDVIKFAGDYPDLGVITYDHKDPYEAWT 97

Query: 341 NPELKRNFNEPLHATAEIFGGDR 409
           + + +RN+ E +      + GDR
Sbjct: 98  DRQNRRNWGELVPIDMMRYRGDR 120


>U55374-7|AAP82641.1|  286|Caenorhabditis elegans Uncoordinated
           protein 2, isoform d protein.
          Length = 286

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 3/44 (6%)
 Frame = -3

Query: 368 H*NSSSIPGYHKDNEDPWSPHQYQVA---SDNHHSPYLQDREYT 246
           H  SS  P YH+D +    PH  Q +     +HH  Y    +Y+
Sbjct: 50  HSRSSHDPQYHQDQQQQQQPHHQQHSQHLQHSHHKTYQNHNQYS 93


>U55374-6|AAM69092.1| 1926|Caenorhabditis elegans Uncoordinated
            protein 2, isoform c protein.
          Length = 1926

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 3/44 (6%)
 Frame = -3

Query: 368  H*NSSSIPGYHKDNEDPWSPHQYQVA---SDNHHSPYLQDREYT 246
            H  SS  P YH+D +    PH  Q +     +HH  Y    +Y+
Sbjct: 1690 HSRSSHDPQYHQDQQQQQQPHHQQHSQHLQHSHHKTYQNHNQYS 1733


>U55374-5|AAP82640.2| 2027|Caenorhabditis elegans Uncoordinated
            protein 2, isoform b protein.
          Length = 2027

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 3/44 (6%)
 Frame = -3

Query: 368  H*NSSSIPGYHKDNEDPWSPHQYQVA---SDNHHSPYLQDREYT 246
            H  SS  P YH+D +    PH  Q +     +HH  Y    +Y+
Sbjct: 1791 HSRSSHDPQYHQDQQQQQQPHHQQHSQHLQHSHHKTYQNHNQYS 1834


>AY264781-1|AAP13107.1| 2027|Caenorhabditis elegans high voltage
            activated calciumchannel alpha-1 subunit protein.
          Length = 2027

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 3/44 (6%)
 Frame = -3

Query: 368  H*NSSSIPGYHKDNEDPWSPHQYQVA---SDNHHSPYLQDREYT 246
            H  SS  P YH+D +    PH  Q +     +HH  Y    +Y+
Sbjct: 1791 HSRSSHDPQYHQDQQQQQQPHHQQHSQHLQHSHHKTYQNHNQYS 1834


>U53341-1|AAC69110.3|  727|Caenorhabditis elegans Hypothetical
           protein F49E10.5 protein.
          Length = 727

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +2

Query: 284 YPKLPDIGEDSKDPHYPYDNPEL 352
           +P LP+    S  PH+PY NP L
Sbjct: 530 FPTLPNFPPMSMSPHFPYPNPLL 552


>AF106575-6|AAC78175.2|  244|Caenorhabditis elegans Hypothetical
           protein K04F1.1 protein.
          Length = 244

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 15/51 (29%), Positives = 26/51 (50%)
 Frame = +2

Query: 227 YGMTVEEYTPYPEDMGYGDYPKLPDIGEDSKDPHYPYDNPELKRNFNEPLH 379
           YG + +E  P P D+G G   + P +  +    +Y     ++KR+F+E  H
Sbjct: 170 YGFSPKEKQP-PVDLGEGKTKEFPPLDPNGNQENYLEMEGKVKRDFSEYSH 219


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,489,277
Number of Sequences: 27780
Number of extensions: 316015
Number of successful extensions: 834
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 801
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 832
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2139963672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)