Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_I21
         (859 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex det...    23   4.8  
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    23   4.8  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    23   4.8  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    23   4.8  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          22   6.3  
DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex det...    22   8.3  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    22   8.3  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   8.3  

>DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 12/53 (22%), Positives = 20/53 (37%)
 Frame = +2

Query: 140 NATRNHWNYQYQPGPYPKTPEERAAAAKKYGMTVEEYTPYPEDMGYGDYPKLP 298
           N+  N++NY      Y           + Y +   E  P P  +  G++P  P
Sbjct: 86  NSLSNNYNYNNNYNNYNNNYNTNYKKLQYYNIINIEQIPVPVPIYCGNFPPRP 138


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 17/68 (25%), Positives = 25/68 (36%), Gaps = 3/68 (4%)
 Frame = +2

Query: 152 NHWNYQYQPGPYPKTPEERAAAAKKYGMTVEEYTPYPEDMGYGDYPKLPD---IGEDSKD 322
           N+ NY+Y    Y             Y +   E  P P  + YG++P  P    I    + 
Sbjct: 92  NNNNYKYN---YNNNNYNNNCKKLYYNINYIEQIPIPVPVYYGNFPPRPMGPWISMQEQI 148

Query: 323 PHYPYDNP 346
           P + Y  P
Sbjct: 149 PRFRYIGP 156


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 17/68 (25%), Positives = 25/68 (36%), Gaps = 3/68 (4%)
 Frame = +2

Query: 152 NHWNYQYQPGPYPKTPEERAAAAKKYGMTVEEYTPYPEDMGYGDYPKLPD---IGEDSKD 322
           N+ NY+Y    Y             Y +   E  P P  + YG++P  P    I    + 
Sbjct: 92  NNNNYKYN---YNNNNYNNNCKKLYYNINYIEQIPIPVPVYYGNFPPRPMGPWISMQEQI 148

Query: 323 PHYPYDNP 346
           P + Y  P
Sbjct: 149 PRFRYIGP 156


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 17/68 (25%), Positives = 25/68 (36%), Gaps = 3/68 (4%)
 Frame = +2

Query: 152 NHWNYQYQPGPYPKTPEERAAAAKKYGMTVEEYTPYPEDMGYGDYPKLPD---IGEDSKD 322
           N+ NY+Y    Y             Y +   E  P P  + YG++P  P    I    + 
Sbjct: 92  NNNNYKYN---YNNNNYNNNCKKLYYNINYIEQIPIPVPVYYGNFPPRPMGPWISMQEQI 148

Query: 323 PHYPYDNP 346
           P + Y  P
Sbjct: 149 PRFRYIGP 156


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 8/35 (22%), Positives = 14/35 (40%)
 Frame = +2

Query: 98  NNSQSIRKTAALFCNATRNHWNYQYQPGPYPKTPE 202
           N + +      +FC+    H+ +   PG     PE
Sbjct: 261 NGASNNNNNGDMFCHTGLGHYGHHPDPGEVDLPPE 295



 Score = 22.2 bits (45), Expect = 6.3
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -3

Query: 329 NEDPWSPHQYQVASDNHHS 273
           ++D  SPH +Q  S NH S
Sbjct: 623 SQDGSSPHFHQSPSQNHSS 641


>DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.8 bits (44), Expect = 8.3
 Identities = 12/43 (27%), Positives = 18/43 (41%), Gaps = 3/43 (6%)
 Frame = +2

Query: 227 YGMTVEEYTPYPEDMGYGDYPKLPD---IGEDSKDPHYPYDNP 346
           Y +   E  P P  + YG++P  P    I    + P + Y  P
Sbjct: 109 YNINYIEQIPIPVPVYYGNFPPRPMGPWISMQEQIPRFRYIGP 151


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 21.8 bits (44), Expect = 8.3
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = +2

Query: 359 NFNEPLHATAEIFGGDRCDISIRRRF 436
           NF        E+  G +CD+S+  RF
Sbjct: 395 NFRIQAGLVDELVRGTKCDVSLLGRF 420


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 8.3
 Identities = 13/42 (30%), Positives = 18/42 (42%)
 Frame = +2

Query: 167  QYQPGPYPKTPEERAAAAKKYGMTVEEYTPYPEDMGYGDYPK 292
            +Y P P P   ++  A A+    + E   P P   G G  PK
Sbjct: 996  RYTP-PQPANAQQGQAQAQAKPQSQEANKPKPATGGKGTRPK 1036


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 190,334
Number of Sequences: 438
Number of extensions: 4287
Number of successful extensions: 20
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27673956
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)