Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP13_F_I19
(870 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0885 + 6966700-6966979,6967930-6968110,6968224-6968365,696... 34 0.17
06_03_0181 + 17618888-17619125,17621503-17621683,17621765-176219... 33 0.30
03_02_0927 - 12452262-12452428,12452538-12452607,12452689-124528... 33 0.30
06_03_0941 + 26179682-26182327 31 1.2
05_06_0144 - 25973635-25973801,25973878-25973947,25974049-259741... 31 1.2
02_02_0367 + 9496893-9497022,9498262-9498442,9498519-9498660,949... 30 2.8
03_01_0347 - 2730242-2730425,2730541-2730692,2730782-2730940,273... 29 4.8
02_02_0011 + 6083431-6085541,6086659-6086779,6087188-6087247,608... 29 4.8
01_06_1670 - 39007402-39008229,39008320-39008567,39009159-390093... 28 8.5
>01_01_0885 +
6966700-6966979,6967930-6968110,6968224-6968365,
6968448-6968517,6968617-6968783
Length = 279
Score = 33.9 bits (74), Expect = 0.17
Identities = 16/47 (34%), Positives = 27/47 (57%)
Frame = +2
Query: 509 LRRLFLVEDLVDSLXFGVLLWCLTYVGACFNGITLIIFGWIALSTLP 649
LR++ L D+ L LW L+ +G+C N +TL+ ++ L T+P
Sbjct: 187 LRQIALGRDIKKFLIVIAGLWLLSVLGSCCNFLTLVYIVFVVLHTVP 233
>06_03_0181 +
17618888-17619125,17621503-17621683,17621765-17621906,
17622002-17622071,17622162-17622307,17623382-17623948,
17624558-17624641,17624723-17624797,17625049-17625217,
17625395-17625586,17625662-17626053
Length = 751
Score = 33.1 bits (72), Expect = 0.30
Identities = 18/46 (39%), Positives = 25/46 (54%)
Frame = +2
Query: 512 RRLFLVEDLVDSLXFGVLLWCLTYVGACFNGITLIIFGWIALSTLP 649
R + L DL L V LW L+ VG+C + +TLI + L T+P
Sbjct: 174 REIALGHDLKKFLGVIVALWVLSEVGSCCDFLTLIYVAVLMLHTVP 219
>03_02_0927 -
12452262-12452428,12452538-12452607,12452689-12452830,
12452937-12453117,12454068-12454203
Length = 231
Score = 33.1 bits (72), Expect = 0.30
Identities = 15/30 (50%), Positives = 20/30 (66%)
Frame = +2
Query: 560 VLLWCLTYVGACFNGITLIIFGWIALSTLP 649
+LLW L+ +G + ITL FG IAL T+P
Sbjct: 156 LLLWLLSVIGNFCSSITLAYFGTIALVTIP 185
>06_03_0941 + 26179682-26182327
Length = 881
Score = 31.1 bits (67), Expect = 1.2
Identities = 20/44 (45%), Positives = 25/44 (56%)
Frame = +2
Query: 509 LRRLFLVEDLVDSLXFGVLLWCLTYVGACFNGITLIIFGWIALS 640
L R FL E LV L GV W L V A F+ +T +FG++ LS
Sbjct: 96 LNRTFLSESLVFRLLPGVS-WPLVPVLAAFDPLTSSLFGFVRLS 138
>05_06_0144 -
25973635-25973801,25973878-25973947,25974049-25974190,
25974647-25974827,25975248-25975443
Length = 251
Score = 31.1 bits (67), Expect = 1.2
Identities = 17/47 (36%), Positives = 25/47 (53%)
Frame = +2
Query: 509 LRRLFLVEDLVDSLXFGVLLWCLTYVGACFNGITLIIFGWIALSTLP 649
LR + DL L V LW L+ +G+C N +TL ++ L T+P
Sbjct: 159 LREIGQGHDLKKFLIVVVGLWVLSVLGSCCNFLTLFYIVFMVLYTVP 205
>02_02_0367 +
9496893-9497022,9498262-9498442,9498519-9498660,
9498757-9498826,9498920-9499089
Length = 230
Score = 29.9 bits (64), Expect = 2.8
Identities = 16/47 (34%), Positives = 25/47 (53%)
Frame = +2
Query: 509 LRRLFLVEDLVDSLXFGVLLWCLTYVGACFNGITLIIFGWIALSTLP 649
LR + L DL+ L V LW L+ +G+ + +TL + L T+P
Sbjct: 137 LREISLGHDLMKFLGVIVALWILSEIGSLCDFLTLFYVAVLMLHTVP 183
>03_01_0347 -
2730242-2730425,2730541-2730692,2730782-2730940,
2734144-2734618,2734713-2734775,2734870-2735078
Length = 413
Score = 29.1 bits (62), Expect = 4.8
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +2
Query: 548 LXFGVLLWCLTYVGACFNGITLIIFGW 628
+ FG+ WC+ Y G NG T+ W
Sbjct: 290 IGFGLKFWCIVYSGFACNGFTVFAQLW 316
>02_02_0011 +
6083431-6085541,6086659-6086779,6087188-6087247,
6087354-6088391,6089733-6089925,6090326-6090375,
6090470-6090744,6091114-6091180,6091189-6091278,
6091301-6091381,6091435-6091593
Length = 1414
Score = 29.1 bits (62), Expect = 4.8
Identities = 20/48 (41%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = +3
Query: 66 ARRP*QTPLVSHSHALRKVSACPSQHPRYAPSSTP-MPGSTHSDCTPK 206
A RP +TP S +H+L +VS P Q +S P M GS HS K
Sbjct: 75 ASRP-ETPRSSGAHSLSRVSLRPPQQVLSIRTSLPTMVGSQHSPAGKK 121
>01_06_1670 -
39007402-39008229,39008320-39008567,39009159-39009364,
39009454-39011054
Length = 960
Score = 28.3 bits (60), Expect = 8.5
Identities = 16/51 (31%), Positives = 25/51 (49%)
Frame = +3
Query: 51 RRESRARRP*QTPLVSHSHALRKVSACPSQHPRYAPSSTPMPGSTHSDCTP 203
RR+ + P +PL+ ++ ALR + + PR P P P TH+ P
Sbjct: 374 RRKPPSPSPPSSPLIENTSALRSTTTTDTTIPR-NPFVQPPPPPTHTHGPP 423
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,846,022
Number of Sequences: 37544
Number of extensions: 239843
Number of successful extensions: 1101
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1062
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1100
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2444475072
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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