Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_I18
         (890 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC823.03 |ppk15||serine/threonine protein kinase Ppk15 |Schizo...    28   1.6  
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac...    26   6.3  

>SPAC823.03 |ppk15||serine/threonine protein kinase Ppk15
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 534

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
 Frame = +1

Query: 49  DLXKIKSQNFIE*NMNQVFHGSISRS-ELQCLH-TSYTKSSRIFHVHLRPEEGQIADVS 219
           +L  I     I+ N  +  H S+ RS   Q L  TS  K +RI H  L+PE   + D+S
Sbjct: 211 ELLSINLYELIKQNQFRGLHLSLVRSFATQLLSCTSLLKQARIIHCDLKPENILLQDLS 269


>SPAC18G6.05c |||translation elongation regulator Gcn1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2670

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 8/21 (38%), Positives = 16/21 (76%)
 Frame = +3

Query: 528  PHVTKSYVYCLLYIRSSFGIR 590
            PH+ +S++  L+Y+ ++FG R
Sbjct: 1732 PHIRESFISLLIYLPATFGSR 1752


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,619,652
Number of Sequences: 5004
Number of extensions: 48782
Number of successful extensions: 108
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 448490560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)