Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_I16
         (874 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC025724-10|AAG23372.2| 1073|Caenorhabditis elegans Hypothetical...    30   1.9  
Z92826-4|CAB07322.1|  309|Caenorhabditis elegans Hypothetical pr...    29   5.7  
AL110490-16|CAB54451.2|  922|Caenorhabditis elegans Hypothetical...    29   5.7  
AF040642-10|AAB94949.2|  576|Caenorhabditis elegans Hypothetical...    29   5.7  

>AC025724-10|AAG23372.2| 1073|Caenorhabditis elegans Hypothetical
            protein Y67D8C.9 protein.
          Length = 1073

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 24/93 (25%), Positives = 44/93 (47%), Gaps = 4/93 (4%)
 Frame = -3

Query: 530  SRGLKWLPSVSATTISTPSLELHPSELQSSTCIWYLPPFFTLKAADVALPAPLQ-TSFLS 354
            S   K L   +   +ST +  ++ S LQS   + Y P F     A++A  +  + T+  S
Sbjct: 944  SHDQKLLRRTARAIVSTKNAVVYASALQSDFSLHYNPTFRKYLWAEIAKMSTFEKTALFS 1003

Query: 353  SRTLDLSAASPV--HTFQ-LTETSAASFLVTSW 264
            + + D+  AS +  H+ + + E      L+T+W
Sbjct: 1004 TNSTDILPASRILLHSVKTIDELQQIRGLLTNW 1036


>Z92826-4|CAB07322.1|  309|Caenorhabditis elegans Hypothetical
           protein C18D11.4 protein.
          Length = 309

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -3

Query: 218 RSPQPRFGXPWRAAGADGERGHREYERYHPMP 123
           RSP+ R+G      G  G   +++Y+R +P P
Sbjct: 43  RSPRARYGGGGGGGGGGGRGRNQQYDRENPQP 74


>AL110490-16|CAB54451.2|  922|Caenorhabditis elegans Hypothetical
           protein Y48B6A.11 protein.
          Length = 922

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 20/78 (25%), Positives = 29/78 (37%)
 Frame = +1

Query: 307 WNVWTGDAADKSRVLLDKKEVWSGAGSATSAAFKVKKGGRYQMQVELCNSDGCSSSEGVE 486
           W  W G   +   +   KKEV      + + A K+ K  R        +SDG S S G E
Sbjct: 413 WTYWYGGGRELW-IPKKKKEVPKKRRQSLADASKIAKRARLGASSTATDSDGSSGSSGSE 471

Query: 487 IVVADTDGSHLRPLDYSI 540
                +      P  Y++
Sbjct: 472 EATEGSSFMRALPAGYTV 489


>AF040642-10|AAB94949.2|  576|Caenorhabditis elegans Hypothetical
           protein C50D2.1 protein.
          Length = 576

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 28/127 (22%), Positives = 52/127 (40%), Gaps = 1/127 (0%)
 Frame = +1

Query: 301 VNWNVWTGDAADKSRVLLDKKEVWSGAGSATSAAFKVKKGGRYQMQVELCNSDGCSSSEG 480
           V++  W G  +D     L  ++ WS      +  ++ + G +    + +    G    +G
Sbjct: 408 VDFGTWGGGYSDN----LGVRDFWSQTQEYGANWYEGQYGYKTGWSIPIVQGIGVEGGQG 463

Query: 481 VEIVVADTDGSHLRPLDYSIGEKNKPFKQTSGKVVGAYFVEWGV-YPRKFPVDRVPVPNL 657
            ++ V   +G   RP+  + G    PF   + + VG  ++  GV + + F V  V V   
Sbjct: 464 TQVSVPIKEGELGRPISVTNGYHVGPFMGLADR-VGVDWLNGGVSWNKGFAVPFVGVGVN 522

Query: 658 THLLYGF 678
           T    GF
Sbjct: 523 TGTAVGF 529


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,727,046
Number of Sequences: 27780
Number of extensions: 384581
Number of successful extensions: 1111
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1051
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1111
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2192413762
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)