Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_I13
         (890 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC926.04c |hsp90|swo1|heat shock protein Hsp90|Schizosaccharom...   186   3e-48
SPAC3H1.04c |mdm31||mitochondrial inner membrane protein Mdm31|S...    27   2.7  
SPBC21C3.04c |||mitochondrial ribosomal protein subunit L34|Schi...    27   4.7  
SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces pombe...    26   6.3  
SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomy...    26   8.3  
SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25 |Schizosac...    26   8.3  

>SPAC926.04c |hsp90|swo1|heat shock protein
           Hsp90|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 704

 Score =  186 bits (454), Expect = 3e-48
 Identities = 88/123 (71%), Positives = 103/123 (83%)
 Frame = +3

Query: 321 NKIRYESLTDPSKLDSGKELYIKIIPNKNEGTLTIIDTGIGMTKADLVNNLGTIAKSGTK 500
           +KIRY+SL+DP  LD+ K+L+I+I P+K    L+I DTGIGMTK DL+NNLG IAKSGTK
Sbjct: 44  DKIRYQSLSDPHALDAEKDLFIRITPDKENKILSIRDTGIGMTKNDLINNLGVIAKSGTK 103

Query: 501 AFMEALQAGADISMIGQFGVGFYSSYLVADRVTVHSKHNDDEQYVWESSAGGSFTVRPDS 680
            FMEA  +GADISMIGQFGVGFYS+YLVAD+V V SKHNDDEQY+WESSAGGSFTV  D+
Sbjct: 104 QFMEAAASGADISMIGQFGVGFYSAYLVADKVQVVSKHNDDEQYIWESSAGGSFTVTLDT 163

Query: 681 GEP 689
             P
Sbjct: 164 DGP 166



 Score = 48.0 bits (109), Expect = 2e-06
 Identities = 22/26 (84%), Positives = 25/26 (96%)
 Frame = +2

Query: 248 IINTFYSNKEIFLRELISNSSDALEQ 325
           IINT YSNKEIFLRELISN+SDAL++
Sbjct: 20  IINTVYSNKEIFLRELISNASDALDK 45



 Score = 30.7 bits (66), Expect = 0.29
 Identities = 16/51 (31%), Positives = 29/51 (56%)
 Frame = +1

Query: 691 LXRGTKIVLHVKEDLAEFMERTQNQRDRKETFPVSLGYPIKLIX*KXTRKK 843
           L RGT+I L +KED  +++E  +  +D  +     + YPI+L+  +   K+
Sbjct: 168 LLRGTEIRLFMKEDQLQYLEE-KTIKDTVKKHSEFISYPIQLVVTREVEKE 217



 Score = 26.6 bits (56), Expect = 4.7
 Identities = 11/17 (64%), Positives = 14/17 (82%)
 Frame = +1

Query: 193 AEVETFAFQAEIAQLMS 243
           +  ETF F+AEI+QLMS
Sbjct: 2   SNTETFKFEAEISQLMS 18


>SPAC3H1.04c |mdm31||mitochondrial inner membrane protein
           Mdm31|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 20/53 (37%), Positives = 30/53 (56%)
 Frame = -2

Query: 505 KALVPDFAMVPKLFTKSALVIPIPVSMIVRVPSFLLGMILMYSSLPLSSFDGS 347
           KA++P F      +  +AL+ PI ++ I    +F+   IL + S PLS FDGS
Sbjct: 486 KAVIPIFTNQVS-YINNALIRPI-IAYINSTRTFI--PILCHVSKPLSDFDGS 534


>SPBC21C3.04c |||mitochondrial ribosomal protein subunit
           L34|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 108

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
 Frame = +1

Query: 304 FIGRFRTKSGMNLSRIRQNSIVAKSCTSRSFPTR---TRALLRSSIPVL 441
           F+ +FR      +   R  SI+A   T R FPTR     A L SS+P +
Sbjct: 3   FMQQFRNLLHPAMKGARNISILAGGGTMRGFPTRNPFNTATLYSSLPTM 51


>SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 969

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -1

Query: 482 DGSQIVHQIGLGHTNTGIDDRKSALVLVGNDLDVQL 375
           DG   V  I  G     +DDR+  L+ + NDL+V L
Sbjct: 2   DGKPQVEVIVNGQVVPNLDDREYRLIKLENDLEVLL 37


>SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = +3

Query: 651 GGSFTVRPDSGEPLGSRYKDRPSRQRGLGRIHGKNTKSKRS 773
           G    +R D+    G+  +D P+R R   +IH K  K   S
Sbjct: 810 GSERVLRKDNSSRNGNEAEDIPARDRKKHKIHDKGKKVNSS 850


>SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 376

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +2

Query: 344 HGSVKTR*WQRAVHQDHSQ-QERGHSYDHRYRYWYDQGRFGEQF 472
           H S K    +R+   D +  +ER H+  +R+R  YD G F + +
Sbjct: 193 HSSDKREHSRRSYRNDRNNWRERTHNDRYRHRDKYDSGYFKKHY 236


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,322,788
Number of Sequences: 5004
Number of extensions: 69529
Number of successful extensions: 192
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 448490560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)