Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_I12
         (873 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|...    33   0.070
SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces pom...    30   0.49 
SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3 |Schiz...    27   3.5  
SPBC16C6.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   6.1  
SPCC1183.11 ||SPCC31H12.01|MS ion channel protein 1|Schizosaccha...    26   6.1  
SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce...    26   8.1  
SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces p...    26   8.1  
SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces pom...    26   8.1  

>SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1234

 Score = 32.7 bits (71), Expect = 0.070
 Identities = 17/65 (26%), Positives = 34/65 (52%)
 Frame = +2

Query: 335 RSRRDTYGQGVLWLYLRDHPVIAALLMRSLVSLMTSLSPPPQTLTLRMLYNGLVSKLPTS 514
           R   D++ Q  LW     H  +++L++R ++  +     P  +L   +L+N L+S L +S
Sbjct: 137 REEFDSFLQS-LWSLSLQHRQLSSLILRGIMEDLYQYDDPVASLRSHILFNALISILSSS 195

Query: 515 MSQHQ 529
            + H+
Sbjct: 196 STLHK 200


>SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 534

 Score = 29.9 bits (64), Expect = 0.49
 Identities = 14/28 (50%), Positives = 20/28 (71%)
 Frame = -2

Query: 542 SLSPSGVGSLMSAVSKRAHCITSLGSTF 459
           SLSPS + S +S++SK   C++ LGS F
Sbjct: 292 SLSPS-IHSTLSSISKMESCLSKLGSAF 318


>SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1253

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 14/47 (29%), Positives = 21/47 (44%)
 Frame = +3

Query: 717 PSSPCVTLLAQDLVFVRSVSSPSEAANRLXE*TSRXQYWTCWRTSVQ 857
           P + C++L   D+V V+   SP EA   +          +CW T  Q
Sbjct: 85  PMAICLSLKGGDIVMVKVDPSPEEAPWEIIGNVENGIVASCWSTDEQ 131


>SPBC16C6.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 350

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 18/70 (25%), Positives = 33/70 (47%)
 Frame = +1

Query: 355 RSGGPLVVPPRPPSDRSIIDAVSGFINDVTLSSSSNVDPKDVIQWARFETADINEPTPEG 534
           R+  P +V P  P   SI  A    +      S   V+  DVI+ +  ++++ + P+ + 
Sbjct: 201 RAASPAMVGPGVPFYSSITGANGNVL--APSGSLKAVENSDVIESSAEDSSNTDNPSTKP 258

Query: 535 ESDSDTSPLL 564
            ++   SPLL
Sbjct: 259 SNEMPISPLL 268


>SPCC1183.11 ||SPCC31H12.01|MS ion channel protein
           1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1011

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 10/13 (76%), Positives = 11/13 (84%)
 Frame = +1

Query: 517 EPTPEGESDSDTS 555
           EPTP G SDSDT+
Sbjct: 868 EPTPPGSSDSDTA 880


>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 428

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 14/35 (40%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
 Frame = -3

Query: 628 PERHPWGVSTKPEPQSHSPGSEVGV-MCQNHFRLL 527
           P   P  V+  P P   SPGS  G  +C N   LL
Sbjct: 327 PSSKPQIVNAPPAPSYFSPGSSFGAQLCANGSTLL 361


>SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 387

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
 Frame = -2

Query: 536 SPSGVGSLMSAVSKRAHCITSLGSTFEEEERVTSLMKPETASI--MLRSLGGRGGTT 372
           S S  G+  + +  R+  ITSL S  EE++++ S  +    S+  ++ +L  +  TT
Sbjct: 201 SESCKGNYQACIESRSTLITSLESLIEEQKKLLSEEEESLKSVESIISNLENKESTT 257


>SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 564

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 18/71 (25%), Positives = 35/71 (49%), Gaps = 10/71 (14%)
 Frame = +3

Query: 117 NLFVNYLFNVCMYGNIIYSFL*A--PEKCLKVCFLFVVT--------SLFSIASKRRNCI 266
           N+F  Y + + + G + +S+      +  LK C +  +T        SL  +ASK  N +
Sbjct: 409 NVFKEYSYVLLIAGGVGFSYTLPILRDLILKECNVTSITFIWSCRSLSLLKVASKSLNSL 468

Query: 267 LHENGFKMSIV 299
           LH++  ++ I+
Sbjct: 469 LHQSNVRLKII 479


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,583,747
Number of Sequences: 5004
Number of extensions: 77280
Number of successful extensions: 289
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 268
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 289
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 436477420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)