Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP13_F_I12
(873 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0527 - 4177928-4178235,4178849-4181438 30 2.8
07_01_0212 + 1571631-1572149 30 2.8
03_05_0609 - 26093605-26093730,26094240-26094329,26094687-260948... 30 2.8
01_07_0342 - 42860548-42862343,42863345-42863396,42863666-428638... 29 3.7
09_04_0081 - 14400293-14400397,14400953-14401036,14401144-144012... 29 6.4
07_03_0488 + 18674465-18674873,18675343-18675520,18675932-186760... 29 6.4
02_04_0489 + 23404757-23404812,23406170-23406296,23406418-234064... 29 6.4
03_05_0288 + 22761801-22761877,22762495-22762556,22763501-227635... 28 8.5
01_07_0280 + 42452993-42453337,42453778-42453981 28 8.5
01_06_1363 - 36681605-36681789,36681875-36681908,36682017-366821... 28 8.5
01_01_0145 + 1327172-1327362,1327491-1328169 28 8.5
>12_01_0527 - 4177928-4178235,4178849-4181438
Length = 965
Score = 29.9 bits (64), Expect = 2.8
Identities = 22/65 (33%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Frame = +1
Query: 436 DVTLSSSSNVDPKDVIQWARFETADINEPTPEGESDSDTSPLLLILGYGSGVQV-WLIPP 612
D++ + S V P D++ T D+ EG S SP L L G G + IP
Sbjct: 310 DLSYNELSGVIPSDILSPVGLWTVDLTHNKLEGPIPSSLSPTLYRLRLGGGNSLNGTIPA 369
Query: 613 T-GDA 624
T GDA
Sbjct: 370 TIGDA 374
>07_01_0212 + 1571631-1572149
Length = 172
Score = 29.9 bits (64), Expect = 2.8
Identities = 20/61 (32%), Positives = 23/61 (37%), Gaps = 3/61 (4%)
Frame = -3
Query: 838 HVQYWXLEVYSXNLFAASDGDETERTKTRSWASRVTQGD---EGPLRCKAVAVLRSGQYT 668
H+Q E Y NL+ SD T SW S GD C A A G YT
Sbjct: 70 HLQPSSTEDYGENLYFNSDQSSTAADAVASWVSPTLDGDWYHHDTNTCTAPAGESCGHYT 129
Query: 667 E 665
+
Sbjct: 130 Q 130
>03_05_0609 -
26093605-26093730,26094240-26094329,26094687-26094806,
26094941-26095038,26095207-26095248,26095994-26096173,
26096361-26096517,26097162-26097249,26097592-26097746,
26100131-26100412
Length = 445
Score = 29.9 bits (64), Expect = 2.8
Identities = 21/89 (23%), Positives = 44/89 (49%), Gaps = 1/89 (1%)
Frame = +1
Query: 346 RHIRSGGPLVVPPRPPSDRSIIDAVSGFINDVTLSSSSNVDPKDVIQWARFETADINEPT 525
R ++G +V+ P PP+D I + + + T+ SS + K + + D N+P+
Sbjct: 186 RQNKTGSAVVLSPGPPNDEKTI-SPAAVDSKFTVQSSPDNGQKGIFGDKKNMPGDSNKPS 244
Query: 526 PE-GESDSDTSPLLLILGYGSGVQVWLIP 609
+ G ++ ++P + + SG Q + +P
Sbjct: 245 FQFGANNGFSTPSMPSIFSASGAQSFSMP 273
>01_07_0342 -
42860548-42862343,42863345-42863396,42863666-42863848,
42864288-42864461,42864528-42864962
Length = 879
Score = 29.5 bits (63), Expect = 3.7
Identities = 16/43 (37%), Positives = 19/43 (44%)
Frame = -3
Query: 715 PLRCKAVAVLRSGQYTEHPHCALSPRQYLPERHPWGVSTKPEP 587
PLR A A SG PH L P R P +S+ P+P
Sbjct: 15 PLRLLAAASASSGSSYSIPHARLRLAVTTPSRLPSPISSSPDP 57
>09_04_0081 -
14400293-14400397,14400953-14401036,14401144-14401214,
14401293-14401380,14401487-14401678,14401772-14402704
Length = 490
Score = 28.7 bits (61), Expect = 6.4
Identities = 29/126 (23%), Positives = 50/126 (39%), Gaps = 2/126 (1%)
Frame = +1
Query: 328 MSAESPRHIRSGGPLVVPPRPPSDRSIIDAVSGFINDVTLSS-SSNVDPKDVIQWARFET 504
+S S R GP+ PR R + V + ++ + + SS + ++ W E
Sbjct: 11 VSTASQGRARGAGPVTAAPR----RRRVSVVRAKVREIFMPALSSTMTEGRIVSWTAAEG 66
Query: 505 ADINEPTPEGESDSDTSPLLLILGYGSGVQVWLIPPTGDAQGGTVVA-TRHSEGAPYTAH 681
+ + P +SD + + + Y V V L+P A G +A SE A
Sbjct: 67 DRVAKGDPVVVVESDKADMDVETFYDGIVAVVLVPAGESAPVGAPIALLAESEEEVAVAQ 126
Query: 682 SAARRL 699
+ A+ L
Sbjct: 127 ARAQAL 132
>07_03_0488 +
18674465-18674873,18675343-18675520,18675932-18676072,
18677736-18677856,18678570-18678704,18679380-18679637
Length = 413
Score = 28.7 bits (61), Expect = 6.4
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = +3
Query: 678 PLRSTATALHRRGPSSPCVTLLAQDLVFVRSVSSPSEAAN 797
P RS A + RRG P LL L+ + SSP+ + N
Sbjct: 4 PARSPAAGVRRRGALLPLAFLLLLLLLLLHLTSSPARSPN 43
>02_04_0489 +
23404757-23404812,23406170-23406296,23406418-23406487,
23406997-23407102,23407185-23407296,23407792-23407914,
23408017-23408176,23408300-23408376,23408474-23408526,
23408700-23408754,23409049-23409683,23410412-23410733,
23410838-23411146,23411468-23411470
Length = 735
Score = 28.7 bits (61), Expect = 6.4
Identities = 19/55 (34%), Positives = 23/55 (41%), Gaps = 4/55 (7%)
Frame = -3
Query: 667 EHPHCALSPRQYLPERHPWGVSTKPE----PQSHSPGSEVGVMCQNHFRLLVLAH 515
E C R ++PE PW +T PE P S + G R LVLAH
Sbjct: 612 EGASCHAGCRHFVPEIGPWSEATIPENPRLPNSDENDMDAGGEEAKQERHLVLAH 666
>03_05_0288 +
22761801-22761877,22762495-22762556,22763501-22763564,
22767651-22767720,22767958-22768041
Length = 118
Score = 28.3 bits (60), Expect = 8.5
Identities = 17/44 (38%), Positives = 22/44 (50%)
Frame = +1
Query: 343 PRHIRSGGPLVVPPRPPSDRSIIDAVSGFINDVTLSSSSNVDPK 474
P + GGP VV PRPP RS + F+ +V + S D K
Sbjct: 4 PPPLPRGGPFVVAPRPP--RSGVS--KPFVGEVLVGKISGYDEK 43
>01_07_0280 + 42452993-42453337,42453778-42453981
Length = 182
Score = 28.3 bits (60), Expect = 8.5
Identities = 17/73 (23%), Positives = 30/73 (41%)
Frame = -3
Query: 796 FAASDGDETERTKTRSWASRVTQGDEGPLRCKAVAVLRSGQYTEHPHCALSPRQYLPERH 617
FA +G + ++ + R+ QG AVA + +G Y H H Y +
Sbjct: 113 FALYEGHQAKKDPANAQRHRIEQG------VAAVAAVGAGGYAYHEHREQKQASYGAKEQ 166
Query: 616 PWGVSTKPEPQSH 578
+G + P+ Q +
Sbjct: 167 QYGYARMPQQQGY 179
>01_06_1363 -
36681605-36681789,36681875-36681908,36682017-36682154,
36682578-36682724,36682821-36682865,36683043-36683331,
36683443-36683669,36684109-36684528
Length = 494
Score = 28.3 bits (60), Expect = 8.5
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = -3
Query: 661 PHCALSPRQYLPERHPWGVSTKPEPQSHSPGSEVG 557
PH LSP LP P +S P P + PG+ G
Sbjct: 46 PHGRLSPAHPLPFAPPRRLSRPPPPATSLPGASPG 80
>01_01_0145 + 1327172-1327362,1327491-1328169
Length = 289
Score = 28.3 bits (60), Expect = 8.5
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
Frame = -1
Query: 825 GXLKFILLTCSPPLMEMKLSAQKLGPGPAESHKAMRGLFDAKQSP--CCGVGSIRSTLTV 652
G F+LL L LS +GP P + + + + A P C GV + ++ TV
Sbjct: 196 GNRVFLLLNGGDVLSGRSLSLVSVGPPPTANCELLYKIELAADGPGPCTGVLKLSASGTV 255
Query: 651 PC 646
PC
Sbjct: 256 PC 257
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,421,936
Number of Sequences: 37544
Number of extensions: 584450
Number of successful extensions: 1983
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1883
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1981
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2456227356
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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