Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP13_F_I12
(873 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U00063-8|AAM48535.1| 1031|Caenorhabditis elegans Hypothetical pr... 59 4e-09
U00063-7|AAK18965.1| 1028|Caenorhabditis elegans Hypothetical pr... 59 4e-09
AF043704-2|AAX88816.1| 407|Caenorhabditis elegans Prion-like-(q... 29 3.3
AC024202-8|AAK93869.2| 816|Caenorhabditis elegans Hypothetical ... 29 3.3
Z27081-3|CAH19085.1| 869|Caenorhabditis elegans Hypothetical pr... 29 4.3
Z27081-2|CAA81607.2| 937|Caenorhabditis elegans Hypothetical pr... 29 4.3
Z22178-3|CAA80159.3| 1027|Caenorhabditis elegans Hypothetical pr... 29 4.3
AF192400-1|AAF24233.1| 1027|Caenorhabditis elegans emb-30 protei... 29 4.3
AF067617-5|AAC17559.1| 2957|Caenorhabditis elegans Temporarily a... 29 4.3
Z34800-2|CAA84324.2| 842|Caenorhabditis elegans Hypothetical pr... 29 5.7
AC024696-12|AAK84511.1| 316|Caenorhabditis elegans Hypothetical... 29 5.7
AC006697-2|AAF60391.1| 316|Caenorhabditis elegans Hypothetical ... 29 5.7
>U00063-8|AAM48535.1| 1031|Caenorhabditis elegans Hypothetical
protein F56C9.10b protein.
Length = 1031
Score = 59.3 bits (137), Expect = 4e-09
Identities = 34/86 (39%), Positives = 52/86 (60%), Gaps = 6/86 (6%)
Frame = +2
Query: 629 EVLSWRQGTVRVLRILPT--PQHG--DCFASKRPLIALCDSAG--PGPSFCALSFISIRG 790
EVLS RQG VR L++LP G D FA RPLIA+ D++ P +C+++ IS+
Sbjct: 272 EVLSERQGPVRALKVLPNNLKLRGKKDSFADSRPLIAMVDASSHHPDRQYCSVTIISLLT 331
Query: 791 GEQVXRINFKXPILDVLANKRSVVIS 868
G +V +I F+ P+ V + + +V+S
Sbjct: 332 GREVHKIKFEEPVCAVNVSDQFLVVS 357
>U00063-7|AAK18965.1| 1028|Caenorhabditis elegans Hypothetical
protein F56C9.10a protein.
Length = 1028
Score = 59.3 bits (137), Expect = 4e-09
Identities = 34/86 (39%), Positives = 52/86 (60%), Gaps = 6/86 (6%)
Frame = +2
Query: 629 EVLSWRQGTVRVLRILPT--PQHG--DCFASKRPLIALCDSAG--PGPSFCALSFISIRG 790
EVLS RQG VR L++LP G D FA RPLIA+ D++ P +C+++ IS+
Sbjct: 269 EVLSERQGPVRALKVLPNNLKLRGKKDSFADSRPLIAMVDASSHHPDRQYCSVTIISLLT 328
Query: 791 GEQVXRINFKXPILDVLANKRSVVIS 868
G +V +I F+ P+ V + + +V+S
Sbjct: 329 GREVHKIKFEEPVCAVNVSDQFLVVS 354
>AF043704-2|AAX88816.1| 407|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 72
protein.
Length = 407
Score = 29.5 bits (63), Expect = 3.3
Identities = 26/116 (22%), Positives = 43/116 (37%), Gaps = 3/116 (2%)
Frame = +1
Query: 376 VPPRPPSDRSIIDAVSGFINDVTLSSSSNVDPKDVIQWARFETADINEPTPEGESDSDTS 555
+ P PP+ +DA+ + L S+++ P+ A ET ++E T S + +
Sbjct: 166 IRPSPPAPPPRVDAIEEAVLRAVLEVSTSIAPETSSLEAEAETTTVSETTTTEVSTTASE 225
Query: 556 PLLLILGYGSGVQVWLIPPTGDAQGGT---VVATRHSEGAPYTAHSAARRLLCIEE 714
L + S PPT T + +E P T +A EE
Sbjct: 226 STSLFPAFASRRHGHRRPPTTTVPSTTLELITEPTSTETIPITTTTAETTTTTSEE 281
>AC024202-8|AAK93869.2| 816|Caenorhabditis elegans Hypothetical
protein Y71H2B.5 protein.
Length = 816
Score = 29.5 bits (63), Expect = 3.3
Identities = 15/52 (28%), Positives = 24/52 (46%)
Frame = -3
Query: 697 VAVLRSGQYTEHPHCALSPRQYLPERHPWGVSTKPEPQSHSPGSEVGVMCQN 542
VA R+G+ P C + PR+Y E + + E +P E V+C +
Sbjct: 452 VAEARAGRAVSFPMCVIKPRKYTEEASHQEIPS--EQHQEAPQEECEVICDD 501
>Z27081-3|CAH19085.1| 869|Caenorhabditis elegans Hypothetical
protein M01A8.2b protein.
Length = 869
Score = 29.1 bits (62), Expect = 4.3
Identities = 12/46 (26%), Positives = 22/46 (47%)
Frame = -2
Query: 473 LGSTFEEEERVTSLMKPETASIMLRSLGGRGGTTKGPPDRMCRGDS 336
L + F + T+ ++PET + +R G + + PP + G S
Sbjct: 200 LNANFSNKNSTTTFVEPETPKVEIRENGNLDNSIETPPQQSPSGSS 245
>Z27081-2|CAA81607.2| 937|Caenorhabditis elegans Hypothetical
protein M01A8.2a protein.
Length = 937
Score = 29.1 bits (62), Expect = 4.3
Identities = 12/46 (26%), Positives = 22/46 (47%)
Frame = -2
Query: 473 LGSTFEEEERVTSLMKPETASIMLRSLGGRGGTTKGPPDRMCRGDS 336
L + F + T+ ++PET + +R G + + PP + G S
Sbjct: 268 LNANFSNKNSTTTFVEPETPKVEIRENGNLDNSIETPPQQSPSGSS 313
>Z22178-3|CAA80159.3| 1027|Caenorhabditis elegans Hypothetical
protein F54C8.3 protein.
Length = 1027
Score = 29.1 bits (62), Expect = 4.3
Identities = 13/46 (28%), Positives = 25/46 (54%)
Frame = +3
Query: 258 NCILHENGFKMSIVFVNKKSIVQDVSGVAATHTVRGSFGCTSATTQ 395
+C+L+E G +M+ + + K I++ + +AAT + C A Q
Sbjct: 682 DCVLNERGSRMNSIEIQKMGILRVLEDLAATLSSPQKIHCDKAGNQ 727
>AF192400-1|AAF24233.1| 1027|Caenorhabditis elegans emb-30 protein
protein.
Length = 1027
Score = 29.1 bits (62), Expect = 4.3
Identities = 13/46 (28%), Positives = 25/46 (54%)
Frame = +3
Query: 258 NCILHENGFKMSIVFVNKKSIVQDVSGVAATHTVRGSFGCTSATTQ 395
+C+L+E G +M+ + + K I++ + +AAT + C A Q
Sbjct: 682 DCVLNERGSRMNSIEIQKMGILRVLEDLAATLSSPQKIHCDKAGNQ 727
>AF067617-5|AAC17559.1| 2957|Caenorhabditis elegans Temporarily
assigned gene nameprotein 192 protein.
Length = 2957
Score = 29.1 bits (62), Expect = 4.3
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 6/47 (12%)
Frame = -3
Query: 676 QYTEHPHC----ALSPRQYLPERHPWGVSTKP--EPQSHSPGSEVGV 554
Q +HPH A P Q+ P++HP T+P + Q H G +GV
Sbjct: 524 QQPQHPHQHQQPASVPMQHHPQQHPSQHQTQPNQQQQQHPSGYGIGV 570
>Z34800-2|CAA84324.2| 842|Caenorhabditis elegans Hypothetical
protein F45H7.2a protein.
Length = 842
Score = 28.7 bits (61), Expect = 5.7
Identities = 20/80 (25%), Positives = 34/80 (42%), Gaps = 2/80 (2%)
Frame = -2
Query: 548 SESLSPSGVGSLMSAVSKRAHCITSLGSTFE--EEERVTSLMKPETASIMLRSLGGRGGT 375
+++ P G + + + A C+ L S + + ER+ + + LRS R
Sbjct: 102 AQNTPPRGRNNDVLETASSAACVNELNSKLQRSQSERIKDRARAIMKKMDLRSTNKRPKE 161
Query: 374 TKGPPDRMCRGDSADILYYT 315
T+G P M GD + Y T
Sbjct: 162 TRGRPAPMNIGDPVLVSYDT 181
>AC024696-12|AAK84511.1| 316|Caenorhabditis elegans Hypothetical
protein F07B7.2 protein.
Length = 316
Score = 28.7 bits (61), Expect = 5.7
Identities = 18/44 (40%), Positives = 21/44 (47%)
Frame = +3
Query: 288 MSIVFVNKKSIVQDVSGVAATHTVRGSFGCTSATTQ*SQHY*CG 419
M + K V VS + ATH R +SATT S HY CG
Sbjct: 78 MQLTVEESKLKVDSVSSMIATHMGREK--SSSATTSASLHYICG 119
>AC006697-2|AAF60391.1| 316|Caenorhabditis elegans Hypothetical
protein W09B7.2 protein.
Length = 316
Score = 28.7 bits (61), Expect = 5.7
Identities = 18/44 (40%), Positives = 21/44 (47%)
Frame = +3
Query: 288 MSIVFVNKKSIVQDVSGVAATHTVRGSFGCTSATTQ*SQHY*CG 419
M + K V VS + ATH R +SATT S HY CG
Sbjct: 78 MQLTVEESKLKVDSVSSMIATHMGREK--SSSATTSASLHYICG 119
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,335,288
Number of Sequences: 27780
Number of extensions: 462995
Number of successful extensions: 1276
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1274
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2192413762
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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