Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_I12
         (873 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   4.9  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   4.9  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    22   6.4  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   6.4  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       22   6.4  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    22   6.4  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -1

Query: 795 SPPLMEMKLSAQKLGPGPAESHK 727
           +PP++      Q L PGPA S K
Sbjct: 420 APPMLLYSFIEQTLQPGPAVSLK 442


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -1

Query: 795 SPPLMEMKLSAQKLGPGPAESHK 727
           +PP++      Q L PGPA S K
Sbjct: 420 APPMLLYSFIEQTLQPGPAVSLK 442


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -3

Query: 589 PQSHSPGSEVGVMCQNHFRLLVLA 518
           P+S +   +VG+M Q H   +V A
Sbjct: 378 PRSSADSCQVGIMAQRHRDTIVSA 401


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = -2

Query: 590 TPEP*PRIRSRGDVSESLSPSGVGS 516
           +P P PRI S    S S SP   G+
Sbjct: 510 SPSPNPRIASAPSSSTSSSPPAKGA 534


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 11/42 (26%), Positives = 21/42 (50%)
 Frame = -1

Query: 282 IHFHVKCNCVVYWQSKTMTSRRIKNKLSDISQALTKMSKLYY 157
           I FH++ +  V W S+ +T         +I+ +L  M  +Y+
Sbjct: 173 IVFHLETHPNVTWYSQCVTFNAFPTYTHEITYSLFGMIMMYW 214


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 14/33 (42%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
 Frame = -2

Query: 485 CITSLGSTFEEEERVTSLMKP-ETASIMLRSLG 390
           CI +   T E  ERVT L  P   A I +R  G
Sbjct: 181 CIGAFDVTLESGERVTFLDTPGHAAFISMRHRG 213


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 249,618
Number of Sequences: 438
Number of extensions: 5622
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28280841
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)