Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_I11
         (889 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2F7.14c |||exosome subunit Rrp4 |Schizosaccharomyces pombe|c...   111   1e-25
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    28   1.5  
SPBC428.03c |pho4||thiamine-repressible acid phosphatase Pho4|Sc...    28   2.0  
SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyce...    28   2.0  
SPAC25B8.14 |mal2||kinetochore protein Mal2 |Schizosaccharomyces...    27   2.7  
SPAC1006.01 |psp3||serine protease Psp3 |Schizosaccharomyces pom...    27   3.6  

>SPAC2F7.14c |||exosome subunit Rrp4 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 329

 Score =  111 bits (268), Expect = 1e-25
 Identities = 48/85 (56%), Positives = 68/85 (80%)
 Frame = +3

Query: 285 TPGEVITGIQDFMRGHGTYAEDDCLKASVAGVMQKVNKLICIRPLKSRYVGEIGDVVVGR 464
           TPG+++T    FMRGHGTY ED  + ASVAG +Q+VNKLI ++PL+S+YV EIGD+++G+
Sbjct: 59  TPGQLVTDDPQFMRGHGTYFEDGGIYASVAGSVQRVNKLISVKPLRSKYVPEIGDLIIGK 118

Query: 465 VLEVQQKRWKVDTNSRLDSILQLSS 539
           + EVQ KRWKVD  ++ +++L LSS
Sbjct: 119 IAEVQPKRWKVDIGAKQNAVLMLSS 143



 Score = 83.4 bits (197), Expect = 4e-17
 Identities = 41/63 (65%), Positives = 45/63 (71%)
 Frame = +1

Query: 544 NLPGGELRRRSEEDEQMMRKHLQEGDLISAEVQNVFSDGSLSLHTRSLKYGKLSQGNFNK 723
           NLPGG  RR+ E DE  MR   QEGDL+ AEVQ  FSDGS+S+HTRSLKYGKL  G F K
Sbjct: 145 NLPGGIQRRKLETDELQMRSFFQEGDLLVAEVQQYFSDGSVSIHTRSLKYGKLRNGVFLK 204

Query: 724 SIP 732
             P
Sbjct: 205 VPP 207



 Score = 36.3 bits (80), Expect = 0.006
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = +3

Query: 723 KYSRSLIKRRKNHFHNLPCAVSVIIGNNGYIWISPH 830
           K   +L+ R K+H + L   V +I+  NGY+W+S H
Sbjct: 204 KVPPALVVRSKSHAYALAGGVDIILSVNGYVWVSKH 239


>SPCC18.03 |||shuttle craft like transcriptional
            regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 13/45 (28%), Positives = 23/45 (51%)
 Frame = +3

Query: 378  VMQKVNKLICIRPLKSRYVGEIGDVVVGRVLEVQQKRWKVDTNSR 512
            ++ K  KL+ +RPL +R + + G      + E+  K   V T S+
Sbjct: 1002 IVNKTGKLVALRPLVNRRLADAGIASRCEICEINDKNEIVKTRSQ 1046


>SPBC428.03c |pho4||thiamine-repressible acid phosphatase
           Pho4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 463

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = -3

Query: 491 PSFLLNFQYSSDYHIAYFSNVTTLQWANAYKFIYFLHNPSN 369
           PS  LNF+Y SD   AY+    + +WA+     Y ++N +N
Sbjct: 282 PSEFLNFEYDSDLDYAYWGGPAS-EWASTLGGAY-VNNLAN 320


>SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1418

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
 Frame = +3

Query: 180  ELKKTLEMVS-HVSIKL-ASERVNHSVASNNDPPRFYTPGEVI 302
            E  KTL  ++  V+ KL +SE +N S     D P FY P E+I
Sbjct: 1238 EFNKTLSTINLEVANKLTSSEYINDSEMQLIDDPVFYPPYEII 1280


>SPAC25B8.14 |mal2||kinetochore protein Mal2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 303

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = -3

Query: 686 KLLVCNESEPSENTFCTSALIKSPSCKCFLIICSSSSERLLNS 558
           K L  + +  S N  CT  +I+ P      ++CSS S R++ S
Sbjct: 218 KSLTIDGTNISANLSCTHLVIQIPKVIQATLVCSSESTRVVKS 260


>SPAC1006.01 |psp3||serine protease Psp3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 451

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 18/70 (25%), Positives = 36/70 (51%)
 Frame = +3

Query: 327 GHGTYAEDDCLKASVAGVMQKVNKLICIRPLKSRYVGEIGDVVVGRVLEVQQKRWKVDTN 506
           GHGT+     +     GV +   KL+ ++ +++   G + D++ G  +E   K+ K D  
Sbjct: 236 GHGTHVAGT-IAGKTFGVSKNA-KLVAVKVMRADGTGTVSDIIKG--IEFAFKQSKKDKE 291

Query: 507 SRLDSILQLS 536
           S + S++ +S
Sbjct: 292 S-IASVVNMS 300


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,504,345
Number of Sequences: 5004
Number of extensions: 73349
Number of successful extensions: 183
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)