Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP13_F_I11
(889 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0529 - 25997736-25998055,25998441-25998804,25999563-259996... 83 3e-16
02_05_1212 - 34960977-34961097,34961283-34961371,34962165-349622... 32 0.70
06_03_1122 - 27775141-27775333,27775414-27775604,27775907-277770... 30 2.8
12_01_0017 - 127617-127775,127920-128000,128284-128395,128486-12... 29 3.7
02_01_0689 + 5137506-5137591,5138641-5138709,5139489-5139580,513... 29 4.9
02_05_0888 - 32517876-32518087,32518320-32518694,32519551-325196... 28 8.6
>04_04_0529 -
25997736-25998055,25998441-25998804,25999563-25999675,
25999880-25999989,26000155-26000311,26000390-26000915,
26001101-26001265,26002470-26002589,26003022-26003093,
26003422-26003499,26003965-26004057,26004491-26004647,
26005351-26005589,26006907-26007050,26007637-26007666,
26010610-26010993,26011486-26011554,26012353-26012418,
26013166-26013255,26013583-26013628,26014318-26014419,
26014552-26014694
Length = 1195
Score = 83.0 bits (196), Expect = 3e-16
Identities = 33/75 (44%), Positives = 57/75 (76%)
Frame = +3
Query: 315 DFMRGHGTYAEDDCLKASVAGVMQKVNKLICIRPLKSRYVGEIGDVVVGRVLEVQQKRWK 494
+ ++GHGT +D + A++ GV+++VNKL+ +R L++RY E+GD++VGRV+E+ KRW+
Sbjct: 45 NILKGHGTSDQDGEVVATLCGVVERVNKLVYVRTLRARYKPEVGDIIVGRVIEIAPKRWR 104
Query: 495 VDTNSRLDSILQLSS 539
++ N D++L LSS
Sbjct: 105 LEINFSQDAVLMLSS 119
Score = 57.6 bits (133), Expect = 1e-08
Identities = 30/56 (53%), Positives = 35/56 (62%)
Frame = +1
Query: 544 NLPGGELRRRSEEDEQMMRKHLQEGDLISAEVQNVFSDGSLSLHTRSLKYGKLSQG 711
NLP G RRR+ DE MR +E D+I AEV+ DGSL L RS KYGKL +G
Sbjct: 121 NLPDGIQRRRTAVDELNMRTIFEENDVICAEVRGFQHDGSLHLQARSQKYGKLERG 176
Score = 41.1 bits (92), Expect = 0.001
Identities = 17/32 (53%), Positives = 23/32 (71%), Gaps = 1/32 (3%)
Frame = +3
Query: 738 LIKRRKNHFHNLP-CAVSVIIGNNGYIWISPH 830
L+KRRK HFH+L V +I+G NG+IW+ H
Sbjct: 185 LVKRRKQHFHHLEQYDVDLILGCNGFIWVGEH 216
>02_05_1212 -
34960977-34961097,34961283-34961371,34962165-34962239,
34962330-34962488
Length = 147
Score = 31.9 bits (69), Expect = 0.70
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = +3
Query: 261 NNDPPRFYTPGEVITGIQDFMRGHGTYAEDDCLKASVAG 377
++D TPGE++ G + G G YA+ C++AS+ G
Sbjct: 2 DHDGGEVVTPGELL-GNSSLLAGLGAYADGRCVRASITG 39
>06_03_1122 -
27775141-27775333,27775414-27775604,27775907-27777099,
27777206-27777353,27777534-27777609,27777696-27777818,
27777886-27778050,27778169-27778259,27778580-27778664,
27778745-27778900,27778992-27779048,27779138-27779236,
27779381-27779499,27780145-27780202
Length = 917
Score = 29.9 bits (64), Expect = 2.8
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Frame = -3
Query: 671 NESEPSENTFCTSALIKSPSC--KCFLIICSSSSERLLNSPPGRF 543
N PS+N F + S C + + CS +S++++N PP F
Sbjct: 744 NFLSPSQNDFPLDQTLSSADCLDESGYVPCSQNSDQVINRPPATF 788
>12_01_0017 -
127617-127775,127920-128000,128284-128395,128486-129538,
129617-129705,130136-130309,130566-130687,130790-130924,
131132-131494,131561-131728,131850-131889
Length = 831
Score = 29.5 bits (63), Expect = 3.7
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = -3
Query: 710 PCESLPYFKLLVCNESEPSENTFCTSALIKSPSC 609
P E + K+ +C+ SEPS + T++ I SP C
Sbjct: 469 PAEDSCFLKV-ICSSSEPSVGSNLTTSCISSPGC 501
>02_01_0689 +
5137506-5137591,5138641-5138709,5139489-5139580,
5139967-5140289,5141373-5142479,5142593-5143279,
5144214-5144522,5145488-5145823,5146165-5146263,
5146676-5146940,5146950-5147104,5147666-5149723,
5150168-5150367,5150662-5150718,5150965-5151079
Length = 1985
Score = 29.1 bits (62), Expect = 4.9
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = +3
Query: 198 EMVSHVSIKLASERVNHSVA-SNNDPPRFYTPGEVITGIQDFMRGHG 335
E VS +++ S RV H SN D + G V+TG+QD + G
Sbjct: 487 EFVSSLTVASGSLRVVHKNGQSNGDVMSYGRHGSVVTGLQDHTQPSG 533
>02_05_0888 - 32517876-32518087,32518320-32518694,32519551-32519638,
32520145-32520384,32521033-32521149,32521213-32521606,
32521752-32521998,32522086-32522315,32522768-32522823,
32522903-32523094,32523274-32523376,32523478-32523544,
32524312-32525154,32525547-32525670,32525965-32526213,
32526354-32526443,32526530-32526649,32526664-32526738,
32527001-32527147,32527255-32527365,32527446-32527667,
32527777-32527896,32527971-32528270,32528355-32528480,
32529246-32529360,32529556-32530019,32530119-32530253,
32530684-32530788,32530876-32531053,32531143-32531864
Length = 2188
Score = 28.3 bits (60), Expect = 8.6
Identities = 17/54 (31%), Positives = 23/54 (42%)
Frame = +1
Query: 457 SEEYWKFNRKDGKLIPIHDLIQYFNFLQXNLPGGELRRRSEEDEQMMRKHLQEG 618
S YWK R P+ D F L P G+L EE +QM + + +G
Sbjct: 1915 SNNYWKDARVIAPPFPVIDPFNAFYLLN---PSGDLSSTQEEFDQMFKNYEWKG 1965
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,289,463
Number of Sequences: 37544
Number of extensions: 424253
Number of successful extensions: 994
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 964
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 993
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2495239620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -