Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_I11
         (889 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC084197-30|AAK68595.1|  303|Caenorhabditis elegans Exosome (mul...   118   4e-27
Z72514-5|CAA96679.5|  818|Caenorhabditis elegans Hypothetical pr...    30   1.9  
Z99710-7|CAJ58493.1|  645|Caenorhabditis elegans Hypothetical pr...    29   5.9  
Z99710-2|CAE54894.1|  562|Caenorhabditis elegans Hypothetical pr...    29   5.9  
Z99710-1|CAB16867.1|  674|Caenorhabditis elegans Hypothetical pr...    29   5.9  

>AC084197-30|AAK68595.1|  303|Caenorhabditis elegans Exosome
           (multiexonuclease complex)component protein 2 protein.
          Length = 303

 Score =  118 bits (285), Expect = 4e-27
 Identities = 77/208 (37%), Positives = 111/208 (53%), Gaps = 7/208 (3%)
 Frame = +3

Query: 249 SVASNN-DPPRFYTPGE-VITGIQDFMRGHGTYAEDDCLKASVAGVMQKVNKLICIRPLK 422
           S A N+ D  +   PG  V    Q FMRGHGTY  D  + +S++GV+Q++N+L+ ++ +K
Sbjct: 20  SEARNDIDETKIVIPGHSVCDAPQQFMRGHGTYVRDGEIVSSLSGVVQQLNRLLMVKTIK 79

Query: 423 SRYVGEIGDVVVGRVLEVQQKRWKVDTNSRLDSILQLSSXKSTWRRIEKAFRRG*ADDEK 602
            RY GE+GDVVV RV+EVQ KRWK D  SRL + L L S           FRR   +DE+
Sbjct: 80  QRYAGEVGDVVVARVVEVQAKRWKCDVASRLHANLPLGSVLLP----GGDFRRKDVEDEE 135

Query: 603 TFTGR*FDKR*STEC-----IF*WFALIAYKKFEIWQAFTGEL**KYSRSLIKRRKNHFH 767
             +   F K     C     +     L+ + +   +      +  K    LIK+ K HFH
Sbjct: 136 KMSE--FLKNGELICAEVQQVQHDGTLMLHTRNNKYGKLQQGILIKVPPHLIKKSKKHFH 193

Query: 768 NLPCAVSVIIGNNGYIWISPHXSDILME 851
            LP  ++VIIG NG +W++P   +  +E
Sbjct: 194 TLPYGMAVIIGCNGSVWVTPSLPETTLE 221



 Score = 73.3 bits (172), Expect = 2e-13
 Identities = 36/64 (56%), Positives = 45/64 (70%)
 Frame = +1

Query: 547 LPGGELRRRSEEDEQMMRKHLQEGDLISAEVQNVFSDGSLSLHTRSLKYGKLSQGNFNKS 726
           LPGG+ RR+  EDE+ M + L+ G+LI AEVQ V  DG+L LHTR+ KYGKL QG   K 
Sbjct: 121 LPGGDFRRKDVEDEEKMSEFLKNGELICAEVQQVQHDGTLMLHTRNNKYGKLQQGILIK- 179

Query: 727 IPGH 738
           +P H
Sbjct: 180 VPPH 183


>Z72514-5|CAA96679.5|  818|Caenorhabditis elegans Hypothetical
           protein T10B10.7 protein.
          Length = 818

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 24/80 (30%), Positives = 36/80 (45%), Gaps = 4/80 (5%)
 Frame = +1

Query: 475 FNRKDGKLIPIHDLIQYFNFLQXNLPGGELRRRSEEDEQ--MMRKHLQEGDLISAEVQNV 648
           +N   GKL+PI  L+   N  Q N   G LRR+    +    + +H+ +  L S +    
Sbjct: 53  YNGGKGKLVPISQLVTIRN-KQRNALLGALRRKKGRGKSGPNILEHIDQDALSSGDFLKA 111

Query: 649 FS--DGSLSLHTRSLKYGKL 702
               DG +    RS KY +L
Sbjct: 112 LKVLDGGMIKGRRSFKYREL 131


>Z99710-7|CAJ58493.1|  645|Caenorhabditis elegans Hypothetical
           protein F08A8.1c protein.
          Length = 645

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 19/69 (27%), Positives = 34/69 (49%)
 Frame = -1

Query: 751 LRFINDREYFY*SSPVKACHISNFLYAMRANHQKIHSVLQRLSNHLPVNVFSSSAHPLLN 572
           L ++ D+ YFY    ++   +S  L +   + +++ SVL R   H+  N+F  +    LN
Sbjct: 564 LDYVRDQLYFY-LQKIRPNAVS-LLDSWEFSDRELRSVLGRRDGHVYENLFKWAKESPLN 621

Query: 571 AFSILRQVD 545
              +L  VD
Sbjct: 622 KTDVLPSVD 630


>Z99710-2|CAE54894.1|  562|Caenorhabditis elegans Hypothetical
           protein F08A8.1b protein.
          Length = 562

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 19/69 (27%), Positives = 34/69 (49%)
 Frame = -1

Query: 751 LRFINDREYFY*SSPVKACHISNFLYAMRANHQKIHSVLQRLSNHLPVNVFSSSAHPLLN 572
           L ++ D+ YFY    ++   +S  L +   + +++ SVL R   H+  N+F  +    LN
Sbjct: 481 LDYVRDQLYFY-LQKIRPNAVS-LLDSWEFSDRELRSVLGRRDGHVYENLFKWAKESPLN 538

Query: 571 AFSILRQVD 545
              +L  VD
Sbjct: 539 KTDVLPSVD 547


>Z99710-1|CAB16867.1|  674|Caenorhabditis elegans Hypothetical
           protein F08A8.1a protein.
          Length = 674

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 19/69 (27%), Positives = 34/69 (49%)
 Frame = -1

Query: 751 LRFINDREYFY*SSPVKACHISNFLYAMRANHQKIHSVLQRLSNHLPVNVFSSSAHPLLN 572
           L ++ D+ YFY    ++   +S  L +   + +++ SVL R   H+  N+F  +    LN
Sbjct: 593 LDYVRDQLYFY-LQKIRPNAVS-LLDSWEFSDRELRSVLGRRDGHVYENLFKWAKESPLN 650

Query: 571 AFSILRQVD 545
              +L  VD
Sbjct: 651 KTDVLPSVD 659


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,127,576
Number of Sequences: 27780
Number of extensions: 403544
Number of successful extensions: 1102
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1064
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1102
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2244863852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)