Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_I11
         (889 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     25   0.92 
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   8.6  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   8.6  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   8.6  

>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 25.0 bits (52), Expect = 0.92
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +1

Query: 82  SNITWSNITRITYTCLINRSMSSLYTIHN 168
           SNI  SN    ++T + N ++  LYT++N
Sbjct: 565 SNIEESNNMTDSFTRIANNTIQELYTLNN 593


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +3

Query: 738 LIKRRKNHFHNLPCAVSVIIG 800
           L+++RK  F  + C VS +IG
Sbjct: 410 LLRKRKELFIAIVCFVSYLIG 430


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +3

Query: 738 LIKRRKNHFHNLPCAVSVIIG 800
           L+++RK  F  + C VS +IG
Sbjct: 463 LLRKRKELFIAIVCFVSYLIG 483


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +2

Query: 647 YFLMVRSHCIQEV*NMASFHRGTLIK 724
           Y  +VRS  +  + +++  H G LIK
Sbjct: 28  YTYLVRSRTLTSLGDLSDVHTGILIK 53


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 228,268
Number of Sequences: 438
Number of extensions: 4536
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28662543
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)