Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_I10
         (882 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       26   0.53 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   0.57 
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   4.9  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   4.9  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 25.8 bits (54), Expect = 0.53
 Identities = 13/36 (36%), Positives = 14/36 (38%), Gaps = 1/36 (2%)
 Frame = +2

Query: 239 PXKXPSXXKKXX-PXPXQKKNPXXXPPPXGGXGXPP 343
           P   PS  +    P      NP   PPP G  G PP
Sbjct: 21  PGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPP 56


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.6 bits (46), Expect(2) = 0.57
 Identities = 8/19 (42%), Positives = 9/19 (47%)
 Frame = -2

Query: 683  LGGXXXPPXGGGXXPPPPP 627
            +G     P  G   PPPPP
Sbjct: 1845 VGSARNIPVSGSPEPPPPP 1863



 Score = 21.0 bits (42), Expect(2) = 0.57
 Identities = 6/6 (100%), Positives = 6/6 (100%)
 Frame = -2

Query: 524  PPPPPP 507
            PPPPPP
Sbjct: 1859 PPPPPP 1864


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +2

Query: 440 GXPXNPPKKXXXPPPP 487
           G    PPK    PPPP
Sbjct: 333 GDSDTPPKPAPPPPPP 348


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = -2

Query: 641  PPPPPXPGXG 612
            PPPPP P  G
Sbjct: 1356 PPPPPPPSSG 1365


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.316    0.151    0.517 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 225,047
Number of Sequences: 438
Number of extensions: 8727
Number of successful extensions: 12
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28644972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)