Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_I08
         (924 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0487 + 16471538-16471540,16471694-16471795,16471880-164719...   126   3e-29
02_03_0220 + 16545571-16545573,16545717-16545818,16545980-165460...    52   9e-07
04_03_0796 + 19721379-19721381,19721479-19721580,19722558-19722590     50   3e-06

>04_03_0487 +
           16471538-16471540,16471694-16471795,16471880-16471908,
           16472619-16472745
          Length = 86

 Score =  126 bits (303), Expect = 3e-29
 Identities = 54/72 (75%), Positives = 60/72 (83%)
 Frame = +3

Query: 111 PLASERRKHKLKRLVPHPNSYFMDVKCPGCYKITTVFSHAQRVVVCAGCSTILCQPTGGR 290
           P   E+ KHK KRLV  PNS+FMDVKC GC+ ITTVFSH+Q VVVC GC T+LCQPTGG+
Sbjct: 13  PAELEKLKHKKKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCPGCQTVLCQPTGGK 72

Query: 291 ARLTEGCSFRRK 326
           ARLTEGCSFRRK
Sbjct: 73  ARLTEGCSFRRK 84


>02_03_0220 +
           16545571-16545573,16545717-16545818,16545980-16546008,
           16549421-16553036
          Length = 1249

 Score = 51.6 bits (118), Expect = 9e-07
 Identities = 22/40 (55%), Positives = 27/40 (67%)
 Frame = +3

Query: 111 PLASERRKHKLKRLVPHPNSYFMDVKCPGCYKITTVFSHA 230
           P   E+ KHK KRLV  PNS+FMDVKC GC+ ++  F  A
Sbjct: 13  PAELEKLKHKKKRLVQSPNSFFMDVKCQGCFNMSVRFDIA 52


>04_03_0796 + 19721379-19721381,19721479-19721580,19722558-19722590
          Length = 45

 Score = 49.6 bits (113), Expect = 3e-06
 Identities = 20/33 (60%), Positives = 24/33 (72%)
 Frame = +3

Query: 111 PLASERRKHKLKRLVPHPNSYFMDVKCPGCYKI 209
           P   E+ KHK KRLV  PNS+FMDVKC GC+ +
Sbjct: 13  PAELEKLKHKKKRLVQSPNSFFMDVKCQGCFSM 45


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,566,544
Number of Sequences: 37544
Number of extensions: 287932
Number of successful extensions: 552
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 534
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 552
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2635816500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)