Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_I08
         (924 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF101312-3|AAC69219.1|   83|Caenorhabditis elegans Ribosomal pro...   127   1e-29
U23517-8|AAM98041.1|  605|Caenorhabditis elegans A kinase anchor...    28   8.2  
U23517-7|AAM98040.1| 1284|Caenorhabditis elegans A kinase anchor...    28   8.2  

>AF101312-3|AAC69219.1|   83|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 27 protein.
          Length = 83

 Score =  127 bits (307), Expect = 1e-29
 Identities = 58/82 (70%), Positives = 67/82 (81%)
 Frame = +3

Query: 84  LAIDFVCILPLASERRKHKLKRLVPHPNSYFMDVKCPGCYKITTVFSHAQRVVVCAGCST 263
           LA+D +   P   E R HKLKRLV HPNSYFMDVKC GC+KI+TVFSHA  VVVC GC+T
Sbjct: 3   LAVDLLHPEP-QREIRCHKLKRLVQHPNSYFMDVKCSGCFKISTVFSHATTVVVCVGCNT 61

Query: 264 ILCQPTGGRARLTEGCSFRRKQ 329
           +LCQPT G+A+LTEGCSFR+KQ
Sbjct: 62  VLCQPTRGKAKLTEGCSFRKKQ 83


>U23517-8|AAM98041.1|  605|Caenorhabditis elegans A kinase anchor
           protein protein1, isoform c protein.
          Length = 605

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
 Frame = +3

Query: 123 ERRKHKLKRLVPHPNSYFM-DVKCPGCYKITTVFSHAQRVVVCAGCSTILC 272
           ERR  + +  +   + Y++ D +CP C    T F+   R   C  C  +LC
Sbjct: 521 ERRLTESELQLGKTSPYWIPDSECPNCMLCNTRFTIITRRHHCRACGRVLC 571


>U23517-7|AAM98040.1| 1284|Caenorhabditis elegans A kinase anchor
           protein protein1, isoform b protein.
          Length = 1284

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
 Frame = +3

Query: 123 ERRKHKLKRLVPHPNSYFM-DVKCPGCYKITTVFSHAQRVVVCAGCSTILC 272
           ERR  + +  +   + Y++ D +CP C    T F+   R   C  C  +LC
Sbjct: 521 ERRLTESELQLGKTSPYWIPDSECPNCMLCNTRFTIITRRHHCRACGRVLC 571


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,242,015
Number of Sequences: 27780
Number of extensions: 216412
Number of successful extensions: 475
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 428
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 466
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2370744068
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)