Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_I07
         (870 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H1.05 |||CAAX prenyl protease |Schizosaccharomyces pombe|ch...    30   0.49 
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple...    28   2.0  
SPBC1773.13 |||aromatic aminotransferase |Schizosaccharomyces po...    27   3.5  
SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyce...    27   4.6  
SPBC215.03c |csn1||COP9/signalosome complex subunit Csn1|Schizos...    26   6.1  

>SPAC3H1.05 |||CAAX prenyl protease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 474

 Score = 29.9 bits (64), Expect = 0.49
 Identities = 18/61 (29%), Positives = 31/61 (50%)
 Frame = -1

Query: 711 LCSYFFTNFH*KMS*SFANFISMFTSFGCVLHYRFIVGIVSFTRRVGHSSSSIFMAEIRV 532
           +  Y  + FH  +  +F    S++TSF  +     IVG++ F+  +G  SS +  A  +V
Sbjct: 347 IIDYGMSLFHLFLFAAFIRNNSLYTSFNFITEKPVIVGLLLFSDALGPLSSILTFASNKV 406

Query: 531 S 529
           S
Sbjct: 407 S 407


>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
           subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1522

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 16/41 (39%), Positives = 24/41 (58%)
 Frame = -3

Query: 496 LISELSFESVSLYHKVFVQVFVCIEQFQILQNWLEQVSLHI 374
           L S L  +SVS+YHKV  +V+      QI++N  +  S+ I
Sbjct: 696 LPSNLGGKSVSIYHKVIKKVYGKEHAQQIIENLQKNPSVTI 736


>SPBC1773.13 |||aromatic aminotransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 481

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +1

Query: 439 PAQRPCDTVTHFQKIAPKLEPVGIHGFLTRADS 537
           PAQ+ CD  T  + + P L  +   G + R DS
Sbjct: 261 PAQQKCDGSTFLKSLVPSLLSLDTEGRVLRLDS 293


>SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1418

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +2

Query: 563 EECPTRRVNDTIPTMNL*WSTQP 631
           E+ PT  +N  +P  NL W +QP
Sbjct: 526 EKAPTASINIDLPFTNLEWHSQP 548


>SPBC215.03c |csn1||COP9/signalosome complex subunit
           Csn1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 422

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -3

Query: 472 SVSLYHKVFVQVFVCIEQFQILQNWLEQVSLH 377
           ++ LY  +F +   C E  Q+   W+E V+ H
Sbjct: 56  NLELYQSLFEEFQDCFENEQLDVEWVESVTFH 87


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,293,548
Number of Sequences: 5004
Number of extensions: 68684
Number of successful extensions: 170
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 434475230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)