Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_I07
         (870 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    23   3.7  
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    23   3.7  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   3.7  
L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        22   8.5  

>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = -3

Query: 625 CTPLQVHCRDRVVYATRGTFFVFDIYGRDQS 533
           C+P  VH    +  + R +  + D+YG ++S
Sbjct: 364 CSPQTVHPETIIDVSRRRSSLICDVYGVNES 394


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +2

Query: 575 TRRVNDTIPTMNL*WSTQPKDVNMLIKLAKD 667
           TR V DTI   N     +P  +NML++L K+
Sbjct: 250 TRVVTDTIKYRNDNNIVRPDFINMLMELQKN 280


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +1

Query: 148 FKL*KVHLSXSKIGYSFGSNPYFCR 222
           F + +V L+   +  S GSNP+ CR
Sbjct: 905 FPVWQVTLNARLVELSLGSNPWSCR 929


>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = -3

Query: 457 HKVFVQVFVCIEQFQILQNWLEQ 389
           HK  ++     E++ ILQNW+++
Sbjct: 55  HKYGLRFEEVSEKYGILQNWMDK 77


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 219,429
Number of Sequences: 438
Number of extensions: 4657
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28159464
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)