Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP13_F_I06
(876 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC19G12.08 |||fatty acid hydroxylase |Schizosaccharomyces pomb... 29 0.66
SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces pombe... 27 4.6
SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory sub... 26 6.1
SPBC1604.19c |||TRAPP complex subunit Trs85 |Schizosaccharomyces... 26 6.1
SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr... 26 8.1
SPAC1952.13 |ned1||lipin|Schizosaccharomyces pombe|chr 1|||Manual 26 8.1
SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr 1|... 26 8.1
SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces pomb... 26 8.1
SPAC1F5.03c |||FAD-dependent oxidoreductase |Schizosaccharomyces... 26 8.1
>SPAC19G12.08 |||fatty acid hydroxylase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 347
Score = 29.5 bits (63), Expect = 0.66
Identities = 19/68 (27%), Positives = 32/68 (47%)
Frame = +1
Query: 460 HSILSCGFKNSIIPVVYYCIFYYFWGHKPRNVVSDVYGLYLEDKPLDNILNLFGSGIWIG 639
H I GF +I+ V+Y + +YF H+ + + Y L+ LD+ + S I
Sbjct: 265 HYIGVAGFSGAILGYVFYDLTHYFLHHRR---MPNAYLTDLKTWHLDHHYKDYKSAYGIT 321
Query: 640 LWFYTSLF 663
WF+ +F
Sbjct: 322 SWFWDRVF 329
>SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 882
Score = 26.6 bits (56), Expect = 4.6
Identities = 19/74 (25%), Positives = 36/74 (48%)
Frame = +3
Query: 126 YVKPLPKYFTRFSMFLSLFCTQNIIFSILYALSGYFTMSLYSSLAKSNFNTLKKICENYD 305
++K + KY ++ ++ T+++ ++ L A SG S + K + + E D
Sbjct: 421 FIKGIQKYISKHRYGNTV--TEDL-WAALSAESGQDISSTMHNWTKKTGYPVLSVSETND 477
Query: 306 GQCLLEQSLFLQMG 347
G+ L+EQ FL G
Sbjct: 478 GELLIEQHRFLSTG 491
>SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory
subunit Ekc1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 838
Score = 26.2 bits (55), Expect = 6.1
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = +1
Query: 484 KNSIIPVVYYCIFYYFWGHKPRNVVSDVYGLYLEDKPLDNILN 612
+N++IP + F Y W + NVV DV L + P+D N
Sbjct: 522 QNNVIPTILDHFFDYPWNNFLHNVVYDVVQQVL-NAPMDKDQN 563
>SPBC1604.19c |||TRAPP complex subunit Trs85 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 658
Score = 26.2 bits (55), Expect = 6.1
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -2
Query: 815 SDRSCVPKYPLIVISEQLPCAK*FFTRLY 729
S++SC+P YPL+ + E K T LY
Sbjct: 350 SEQSCLPLYPLLPVEEVEGMKKFVQTMLY 378
>SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 905
Score = 25.8 bits (54), Expect = 8.1
Identities = 15/66 (22%), Positives = 30/66 (45%)
Frame = +1
Query: 448 KLAIHSILSCGFKNSIIPVVYYCIFYYFWGHKPRNVVSDVYGLYLEDKPLDNILNLFGSG 627
++A+ ++CG + ++IP +C + GH+ N SD+ +K + + L
Sbjct: 104 QMALLQFMTCGLEKTMIPASIHC-DHLIVGHRGAN--SDIPDSIANNKEIFDFLQSAAKK 160
Query: 628 IWIGLW 645
I W
Sbjct: 161 YGIQFW 166
>SPAC1952.13 |ned1||lipin|Schizosaccharomyces pombe|chr 1|||Manual
Length = 656
Score = 25.8 bits (54), Expect = 8.1
Identities = 10/32 (31%), Positives = 16/32 (50%)
Frame = +1
Query: 526 YFWGHKPRNVVSDVYGLYLEDKPLDNILNLFG 621
+FW H V+SD+ G + L ++ L G
Sbjct: 371 FFWKHNDPVVISDIDGTITKSDALGHMFTLIG 402
>SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 785
Score = 25.8 bits (54), Expect = 8.1
Identities = 14/51 (27%), Positives = 24/51 (47%)
Frame = +3
Query: 150 FTRFSMFLSLFCTQNIIFSILYALSGYFTMSLYSSLAKSNFNTLKKICENY 302
+TR ++SLF N+ A+ G +L +S+ F + K + E Y
Sbjct: 418 YTRAPEYISLFIDDNLKKDARKAIEGSIEATLQNSVTLFRFISEKDVFEKY 468
>SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 775
Score = 25.8 bits (54), Expect = 8.1
Identities = 8/30 (26%), Positives = 18/30 (60%)
Frame = -1
Query: 567 NIADYISWFMAPKVIKNAIINHRNNRVFKT 478
N++ + WF+ V KN ++++ +FK+
Sbjct: 729 NLSSKVDWFLKTYVRKNPLVDNSKKALFKS 758
>SPAC1F5.03c |||FAD-dependent oxidoreductase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 382
Score = 25.8 bits (54), Expect = 8.1
Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 4/67 (5%)
Frame = +3
Query: 120 CYYVKPLPKYFTRFSMFLSLFCTQNIIFSILYALSGYFTMSLY----SSLAKSNFNTLKK 287
C Y F R ++LF + I + SG+ ++ + SSLA ++N K+
Sbjct: 19 CLYFLAHHPSFNRDRDTITLFESAGIASAASGKASGFLSLEWHGPSTSSLAALSYNLHKE 78
Query: 288 ICENYDG 308
+ + YDG
Sbjct: 79 LSDQYDG 85
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,720,500
Number of Sequences: 5004
Number of extensions: 82581
Number of successful extensions: 190
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 190
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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