Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_I06
         (876 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0490 - 6440176-6440448,6440785-6441074,6441156-6441304,644...    31   1.6  
11_01_0710 - 5830475-5830595,5831498-5834124                           29   4.9  
07_01_0251 + 1874148-1874311,1874367-1874429,1874484-1874709,187...    28   8.5  

>04_01_0490 -
           6440176-6440448,6440785-6441074,6441156-6441304,
           6441432-6441890,6441973-6442269,6442604-6443502,
           6443793-6443827,6443984-6444078,6444184-6444247,
           6446099-6446175,6446330-6446514
          Length = 940

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = +1

Query: 481 FKNSIIPVVYYCIFYYFWGHKPRNVVSDVYGLYL 582
           F   + P+VY  +FYYF  + PR+ ++D Y + L
Sbjct: 795 FSTIVKPIVYLSMFYYF--NNPRSTITDNYIILL 826


>11_01_0710 - 5830475-5830595,5831498-5834124
          Length = 915

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
 Frame = +3

Query: 96  LKYAYIYGCYYVKPLPKYFTRFS--MFLSLFCTQNIIFSILYALSG 227
           LKY  + GC+ +K LPK F +    + L L C  N +  +  AL G
Sbjct: 219 LKYLNLSGCFGIKELPKSFQQLKNLVHLDLSCC-NCVKDLSEALDG 263


>07_01_0251 +
           1874148-1874311,1874367-1874429,1874484-1874709,
           1874830-1875081,1875158-1875267,1875720-1875815,
           1875898-1875985,1876246-1876475,1876745-1876929,
           1877136-1877335,1877592-1877924,1878058-1878159,
           1878869-1879166,1879626-1879774,1879859-1880143,
           1880531-1880728
          Length = 992

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 14/28 (50%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +1

Query: 502 VVYY-CIFYYFWGHKPRNVVSDVYGLYL 582
           ++YY C+F YFW      VVS V+G YL
Sbjct: 855 IIYYVCVFLYFW-VLSTPVVSLVFGSYL 881


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,728,571
Number of Sequences: 37544
Number of extensions: 435718
Number of successful extensions: 851
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 835
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 850
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2467979640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)