Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP13_F_I06
(876 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ141696-1|AAZ73087.1| 674|Homo sapiens NDC1 protein. 51 5e-06
BC003082-1|AAH03082.1| 674|Homo sapiens transmembrane protein 4... 51 5e-06
AL354613-1|CAB89726.1| 673|Homo sapiens hypothetical protein pr... 51 5e-06
AL354612-1|CAB89725.1| 542|Homo sapiens hypothetical protein pr... 51 5e-06
AL049745-2|CAI22180.1| 674|Homo sapiens transmembrane protein 4... 51 5e-06
AK001269-1|BAA91592.1| 674|Homo sapiens protein ( Homo sapiens ... 51 5e-06
BC109310-1|AAI09311.1| 873|Homo sapiens N-deacetylase/N-sulfotr... 31 7.2
BC109309-1|AAI09310.1| 873|Homo sapiens N-deacetylase/N-sulfotr... 31 7.2
AY358852-1|AAQ89211.1| 385|Homo sapiens HSS3 protein. 31 7.2
AF074924-1|AAD15978.1| 873|Homo sapiens heparan sulfate N-deace... 31 7.2
AC108201-1|AAY41001.1| 356|Homo sapiens unknown protein. 31 7.2
>DQ141696-1|AAZ73087.1| 674|Homo sapiens NDC1 protein.
Length = 674
Score = 51.2 bits (117), Expect = 5e-06
Identities = 33/121 (27%), Positives = 57/121 (47%), Gaps = 3/121 (2%)
Frame = +1
Query: 412 FPHIYQDKFQQIKLAIHSILSCGFKNSIIPVVYYCIFYYFWGHKPRNVVSDVYGLYLED- 588
FP I Q KF + + ++ ++ S+ V +CI YYF G+ P+ +S L++++
Sbjct: 194 FPIIQQYKFLRFRRSLLLLVKHSCVESLFLVRNFCILYYFLGYIPKAWISTAMNLHIDEQ 253
Query: 589 --KPLDNILNLFGSGIWIGLWFYTSLFLISVYAMRTVFNIVLTEPMKFQ*SLVKNYFAQG 762
+PLD + L + +W L + Y +F I TE F V+ FA+G
Sbjct: 254 VHRPLDTVSGLLNLSLLYHVWLCGVFLLTTWYVSWILFKIYATEAHVFP---VQPPFAEG 310
Query: 763 N 765
+
Sbjct: 311 S 311
>BC003082-1|AAH03082.1| 674|Homo sapiens transmembrane protein 48
protein.
Length = 674
Score = 51.2 bits (117), Expect = 5e-06
Identities = 33/121 (27%), Positives = 57/121 (47%), Gaps = 3/121 (2%)
Frame = +1
Query: 412 FPHIYQDKFQQIKLAIHSILSCGFKNSIIPVVYYCIFYYFWGHKPRNVVSDVYGLYLED- 588
FP I Q KF + + ++ ++ S+ V +CI YYF G+ P+ +S L++++
Sbjct: 194 FPIIQQYKFLRFRRSLLLLVKHSCVESLFLVRNFCILYYFLGYIPKAWISTAMNLHIDEQ 253
Query: 589 --KPLDNILNLFGSGIWIGLWFYTSLFLISVYAMRTVFNIVLTEPMKFQ*SLVKNYFAQG 762
+PLD + L + +W L + Y +F I TE F V+ FA+G
Sbjct: 254 VHRPLDTVSGLLNLSLLYHVWLCGVFLLTTWYVSWILFKIYATEAHVFP---VQPPFAEG 310
Query: 763 N 765
+
Sbjct: 311 S 311
>AL354613-1|CAB89726.1| 673|Homo sapiens hypothetical protein
protein.
Length = 673
Score = 51.2 bits (117), Expect = 5e-06
Identities = 33/121 (27%), Positives = 57/121 (47%), Gaps = 3/121 (2%)
Frame = +1
Query: 412 FPHIYQDKFQQIKLAIHSILSCGFKNSIIPVVYYCIFYYFWGHKPRNVVSDVYGLYLED- 588
FP I Q KF + + ++ ++ S+ V +CI YYF G+ P+ +S L++++
Sbjct: 193 FPIIQQYKFLRFRRSLLLLVKHSCVESLFLVRNFCILYYFLGYIPKAWISTAMNLHIDEQ 252
Query: 589 --KPLDNILNLFGSGIWIGLWFYTSLFLISVYAMRTVFNIVLTEPMKFQ*SLVKNYFAQG 762
+PLD + L + +W L + Y +F I TE F V+ FA+G
Sbjct: 253 VHRPLDTVSGLLNLSLLYHVWLCGVFLLTTWYVSWILFKIYATEAHVFP---VQPPFAEG 309
Query: 763 N 765
+
Sbjct: 310 S 310
>AL354612-1|CAB89725.1| 542|Homo sapiens hypothetical protein
protein.
Length = 542
Score = 51.2 bits (117), Expect = 5e-06
Identities = 33/121 (27%), Positives = 57/121 (47%), Gaps = 3/121 (2%)
Frame = +1
Query: 412 FPHIYQDKFQQIKLAIHSILSCGFKNSIIPVVYYCIFYYFWGHKPRNVVSDVYGLYLED- 588
FP I Q KF + + ++ ++ S+ V +CI YYF G+ P+ +S L++++
Sbjct: 194 FPIIQQYKFLRFRRSLLLLVKHSCVESLFLVRNFCILYYFLGYIPKAWISTAMNLHIDEQ 253
Query: 589 --KPLDNILNLFGSGIWIGLWFYTSLFLISVYAMRTVFNIVLTEPMKFQ*SLVKNYFAQG 762
+PLD + L + +W L + Y +F I TE F V+ FA+G
Sbjct: 254 VHRPLDTVSGLLNLSLLYHVWLCGVFLLTTWYVSWILFKIYATEAHVFP---VQPPFAEG 310
Query: 763 N 765
+
Sbjct: 311 S 311
>AL049745-2|CAI22180.1| 674|Homo sapiens transmembrane protein 48
protein.
Length = 674
Score = 51.2 bits (117), Expect = 5e-06
Identities = 33/121 (27%), Positives = 57/121 (47%), Gaps = 3/121 (2%)
Frame = +1
Query: 412 FPHIYQDKFQQIKLAIHSILSCGFKNSIIPVVYYCIFYYFWGHKPRNVVSDVYGLYLED- 588
FP I Q KF + + ++ ++ S+ V +CI YYF G+ P+ +S L++++
Sbjct: 194 FPIIQQYKFLRFRRSLLLLVKHSCVESLFLVRNFCILYYFLGYIPKAWISTAMNLHIDEQ 253
Query: 589 --KPLDNILNLFGSGIWIGLWFYTSLFLISVYAMRTVFNIVLTEPMKFQ*SLVKNYFAQG 762
+PLD + L + +W L + Y +F I TE F V+ FA+G
Sbjct: 254 VHRPLDTVSGLLNLSLLYHVWLCGVFLLTTWYVSWILFKIYATEAHVFP---VQPPFAEG 310
Query: 763 N 765
+
Sbjct: 311 S 311
>AK001269-1|BAA91592.1| 674|Homo sapiens protein ( Homo sapiens
cDNA FLJ10407 fis, clone NT2RM4000520. ).
Length = 674
Score = 51.2 bits (117), Expect = 5e-06
Identities = 33/121 (27%), Positives = 57/121 (47%), Gaps = 3/121 (2%)
Frame = +1
Query: 412 FPHIYQDKFQQIKLAIHSILSCGFKNSIIPVVYYCIFYYFWGHKPRNVVSDVYGLYLED- 588
FP I Q KF + + ++ ++ S+ V +CI YYF G+ P+ +S L++++
Sbjct: 194 FPIIQQYKFLRFRRSLLLLVKHSCVESLFLVRNFCILYYFLGYIPKAWISTAMNLHIDEQ 253
Query: 589 --KPLDNILNLFGSGIWIGLWFYTSLFLISVYAMRTVFNIVLTEPMKFQ*SLVKNYFAQG 762
+PLD + L + +W L + Y +F I TE F V+ FA+G
Sbjct: 254 VHRPLDTVSGLLNLSLLYHVWLCGVFLLTTWYVSWILFKIYATEAHVFP---VQPPFAEG 310
Query: 763 N 765
+
Sbjct: 311 S 311
>BC109310-1|AAI09311.1| 873|Homo sapiens
N-deacetylase/N-sulfotransferase (heparan glucosaminyl)
3 protein.
Length = 873
Score = 30.7 bits (66), Expect = 7.2
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +3
Query: 126 YVKPLPKYFTRFSMFLSLFCTQNIIFSILYALSGY 230
++ L ++F R + L+ FC +II S Y SGY
Sbjct: 3 FIMKLHRHFQRTVILLATFCMVSIIISAYYLYSGY 37
>BC109309-1|AAI09310.1| 873|Homo sapiens
N-deacetylase/N-sulfotransferase (heparan glucosaminyl)
3 protein.
Length = 873
Score = 30.7 bits (66), Expect = 7.2
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +3
Query: 126 YVKPLPKYFTRFSMFLSLFCTQNIIFSILYALSGY 230
++ L ++F R + L+ FC +II S Y SGY
Sbjct: 3 FIMKLHRHFQRTVILLATFCMVSIIISAYYLYSGY 37
>AY358852-1|AAQ89211.1| 385|Homo sapiens HSS3 protein.
Length = 385
Score = 30.7 bits (66), Expect = 7.2
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +3
Query: 126 YVKPLPKYFTRFSMFLSLFCTQNIIFSILYALSGY 230
++ L ++F R + L+ FC +II S Y SGY
Sbjct: 3 FIMKLHRHFQRTVILLATFCMVSIIISAYYLYSGY 37
>AF074924-1|AAD15978.1| 873|Homo sapiens heparan sulfate
N-deacetylase/N-sulfotransferase 3 protein.
Length = 873
Score = 30.7 bits (66), Expect = 7.2
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +3
Query: 126 YVKPLPKYFTRFSMFLSLFCTQNIIFSILYALSGY 230
++ L ++F R + L+ FC +II S Y SGY
Sbjct: 3 FIMKLHRHFQRTVILLATFCMVSIIISAYYLYSGY 37
>AC108201-1|AAY41001.1| 356|Homo sapiens unknown protein.
Length = 356
Score = 30.7 bits (66), Expect = 7.2
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +3
Query: 126 YVKPLPKYFTRFSMFLSLFCTQNIIFSILYALSGY 230
++ L ++F R + L+ FC +II S Y SGY
Sbjct: 3 FIMKLHRHFQRTVILLATFCMVSIIISAYYLYSGY 37
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 127,730,093
Number of Sequences: 237096
Number of extensions: 2690571
Number of successful extensions: 4828
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 4649
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4822
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11159604822
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -