Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_I05
         (982 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16G5.09 |||serine carboxypeptidase |Schizosaccharomyces pomb...    27   3.1  
SPCC1223.10c |eaf1||RNA polymerase II transcription elongation f...    27   4.0  

>SPBC16G5.09 |||serine carboxypeptidase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 510

 Score = 27.5 bits (58), Expect = 3.1
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +3

Query: 393 SSQVPHQHPQSNRVLLRRXPVQPVGSILSLSEPSPDV 503
           S  VP+ HP   + L+         S+ S+ +PSPD+
Sbjct: 426 SHMVPYDHPNEMKTLITAFFNNDFASLPSVPKPSPDL 462


>SPCC1223.10c |eaf1||RNA polymerase II transcription elongation
           factor SpEAF|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 251

 Score = 27.1 bits (57), Expect = 4.0
 Identities = 17/58 (29%), Positives = 24/58 (41%)
 Frame = -1

Query: 517 PGDSVTSGDGSDRLRMEPTGCTGXRRNSTRXXXXXXXXXXXXLHCIKPDSSAERHPAV 344
           P +++T  D S     + T  +    NSTR               IKP SS  R+PA+
Sbjct: 114 PSNAITQSDNSQISESKSTSQSAVTTNSTRRKEKELEASKDGK--IKPSSSNTRYPAI 169


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,425,848
Number of Sequences: 5004
Number of extensions: 31871
Number of successful extensions: 67
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 505288058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)