Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_I05
         (982 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0158 + 14207463-14207629,14207724-14207774,14207874-142080...    31   1.9  
11_08_0048 - 28022335-28022520,28022607-28022699,28022804-280228...    29   4.3  
11_06_0221 - 21387365-21387652,21387892-21389952,21390360-21390395     29   4.3  
08_02_0139 + 13065468-13065902,13067196-13067279,13068221-13068499     29   4.3  

>11_04_0158 +
           14207463-14207629,14207724-14207774,14207874-14208002,
           14209342-14209447,14209491-14209601,14210042-14210098,
           14210903-14211727
          Length = 481

 Score = 30.7 bits (66), Expect = 1.9
 Identities = 15/46 (32%), Positives = 15/46 (32%)
 Frame = +2

Query: 824 GSGXXXLPXXGHPFXXPKPXXFRPXPRXPXPFPKXGVXWDHXLXXP 961
           G     LP    P   P P  F P  R   PFP  G    H    P
Sbjct: 267 GHAPPQLPPGASPLFPPGPAAFHPSSRPMPPFPGGGKDESHLFHLP 312


>11_08_0048 -
           28022335-28022520,28022607-28022699,28022804-28022882,
           28022951-28023061,28023133-28023390,28023468-28023970,
           28024094-28024729,28024778-28025116
          Length = 734

 Score = 29.5 bits (63), Expect = 4.3
 Identities = 12/33 (36%), Positives = 15/33 (45%)
 Frame = +3

Query: 450 PVQPVGSILSLSEPSPDVTESPGVRPPITISPT 548
           P +P   + S   P P V   PG  PP+   PT
Sbjct: 285 PPRPEPPVASPPRPEPPVASPPGSEPPVASPPT 317


>11_06_0221 - 21387365-21387652,21387892-21389952,21390360-21390395
          Length = 794

 Score = 29.5 bits (63), Expect = 4.3
 Identities = 14/32 (43%), Positives = 16/32 (50%)
 Frame = +3

Query: 435 LLRRXPVQPVGSILSLSEPSPDVTESPGVRPP 530
           LLR  P  PV S+ +   P P V   P  RPP
Sbjct: 266 LLRHTPPPPVSSLRTQPPPPPIVVMRPSSRPP 297


>08_02_0139 + 13065468-13065902,13067196-13067279,13068221-13068499
          Length = 265

 Score = 29.5 bits (63), Expect = 4.3
 Identities = 17/66 (25%), Positives = 25/66 (37%)
 Frame = +3

Query: 342 RTAGCLSADESGLMQCKSSQVPHQHPQSNRVLLRRXPVQPVGSILSLSEPSPDVTESPGV 521
           R +  L A  +      S +VPH HP     +    P   + S LS +  +      P  
Sbjct: 4   RASHLLRATATATATAVSRRVPHPHPAPATAISTVLPAPKLASSLSYATQAAAAAAVPAA 63

Query: 522 RPPITI 539
           R P T+
Sbjct: 64  RAPRTV 69


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,597,286
Number of Sequences: 37544
Number of extensions: 308643
Number of successful extensions: 896
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 859
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 895
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2858396560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)