Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_I04
         (877 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0360 - 17966857-17966865,17966866-17966954,17967276-179673...   120   2e-27
05_02_0025 - 5710833-5711234,5711373-5711528,5714615-5715382           63   3e-10
01_02_0069 - 10813467-10813475,10813476-10813564,10813865-108139...    59   5e-09
10_01_0316 + 3479574-3482679,3482766-3483127                           29   6.5  
06_01_0893 - 6834350-6834464,6835042-6835218,6835301-6835350,683...    28   8.5  

>12_02_0360 -
           17966857-17966865,17966866-17966954,17967276-17967399,
           17967639-17967717,17968267-17968352,17968471-17968661,
           17970496-17970560,17971192-17971282,17971705-17971801,
           17971883-17972128,17972248-17972505
          Length = 444

 Score =  120 bits (288), Expect = 2e-27
 Identities = 75/195 (38%), Positives = 110/195 (56%), Gaps = 6/195 (3%)
 Frame = +1

Query: 277 LRNGGIIPDVAQDLHRKYIEPTVTETLLKANLLMKDISAIAVTVKPGLPLSLAVGMKYAK 456
           +R GG+ P +A++ H   I+  V + L  AN+   D+SA+AVTV PGL L L VG+  A+
Sbjct: 148 VRWGGVAPKMAEEAHSLAIDQVVQKALDDANVSENDLSAVAVTVGPGLSLCLRVGVHKAR 207

Query: 457 HLARINAKPIIPIHHMEAHALT-----VRM-EHNVNFPYLVLLISGGHCLLAVVQNINKF 618
            +A+    PI+ +HHMEAHAL      VR+   +++FP+L LLISGGH LL +   + ++
Sbjct: 208 KIAKSFRLPIVGVHHMEAHALVSSSIDVRLVNKDLDFPFLALLISGGHNLLVLAHGLGQY 267

Query: 619 LLLGKSIDLAPGELFDKIARRMKLRNVPELSTMCGGQAVETAALRATNPEMFNLPIPLXT 798
           + LG +ID A GE +DK AR + L          GG A+E  AL   +P      +P+  
Sbjct: 268 VQLGTTIDDAIGEAYDKSARWLGLD-----MRKGGGPALEQLALEG-DPNAVKFSVPMRQ 321

Query: 799 S*RLQF*F*WIKTSV 843
                F +  +KT V
Sbjct: 322 HKDCNFSYAGLKTQV 336


>05_02_0025 - 5710833-5711234,5711373-5711528,5714615-5715382
          Length = 441

 Score = 62.9 bits (146), Expect = 3e-10
 Identities = 37/138 (26%), Positives = 69/138 (50%)
 Frame = +1

Query: 289 GIIPDVAQDLHRKYIEPTVTETLLKANLLMKDISAIAVTVKPGLPLSLAVGMKYAKHLAR 468
           G +P      H  ++ P +   L +A +   D++ +  T  PG+   L V    A+ L+ 
Sbjct: 113 GFLPRETAHHHLAHLLPLLRAALGEAGVTPADLACVCYTKGPGMGAPLQVAAAAARALSL 172

Query: 469 INAKPIIPIHHMEAHALTVRMEHNVNFPYLVLLISGGHCLLAVVQNINKFLLLGKSIDLA 648
           +  KP++ ++H  AH    R       P +VL +SGG+  + +  +  ++ + G++ID+A
Sbjct: 173 LWGKPLVGVNHCVAHVEMGRAVTGAVDP-VVLYVSGGNTQV-IAYSEGRYRIFGETIDIA 230

Query: 649 PGELFDKIARRMKLRNVP 702
            G   D+ AR ++L N P
Sbjct: 231 VGNCLDRFARVLELSNDP 248


>01_02_0069 -
           10813467-10813475,10813476-10813564,10813865-10813988,
           10814227-10814305,10815298-10815388,10815808-10815904,
           10816197-10816241,10816369-10816464
          Length = 209

 Score = 58.8 bits (136), Expect = 5e-09
 Identities = 30/67 (44%), Positives = 42/67 (62%)
 Frame = +1

Query: 343 VTETLLKANLLMKDISAIAVTVKPGLPLSLAVGMKYAKHLARINAKPIIPIHHMEAHALT 522
           V + L  AN+   D+SA+AVTV PGL L L VG+  A+ +A+    PI+ +HHMEA AL 
Sbjct: 49  VQKALDNANVSESDLSAVAVTVGPGLSLCLRVGVHKARKIAKSFHLPIVGVHHMEAQALV 108

Query: 523 VRMEHNV 543
            R   ++
Sbjct: 109 SRSTDDI 115


>10_01_0316 + 3479574-3482679,3482766-3483127
          Length = 1155

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 18/63 (28%), Positives = 29/63 (46%)
 Frame = -3

Query: 761 LVALNAAVSTACPPHIVESSGTFLSFILLAILSNSSPGAKSILLPRRRNLFIFWTTANKQ 582
           L+    A S   PP    S+ T  + +LL+ L +  P ++ +LLP  R      ++ N  
Sbjct: 15  LLLFPLATSAQPPPPSNTSASTSAAAVLLSFLDSLPPASQRLLLPSWRQSRSSSSSGNAT 74

Query: 581 *PP 573
            PP
Sbjct: 75  APP 77


>06_01_0893 - 6834350-6834464,6835042-6835218,6835301-6835350,
            6836348-6836416,6836495-6836593,6836681-6836759,
            6837604-6837704,6838645-6838713,6839548-6839588,
            6839793-6841159,6841472-6841575,6841914-6842351,
            6843040-6843567
          Length = 1078

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = -2

Query: 264  LGFQGLRNDIPFFVDYSTSSIITRCF 187
            +GFQ  R DIP  VD + + II RC+
Sbjct: 1014 VGFQQRRLDIPAHVDPTIAEIIRRCW 1039


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,013,229
Number of Sequences: 37544
Number of extensions: 442043
Number of successful extensions: 848
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 819
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 846
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2467979640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)