Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_I04
         (877 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81030-8|CAB02716.1|  421|Caenorhabditis elegans Hypothetical pr...   138   5e-33
AC024859-27|AAK29978.4|  337|Caenorhabditis elegans Hypothetical...    69   6e-12

>Z81030-8|CAB02716.1|  421|Caenorhabditis elegans Hypothetical
           protein C01G10.10 protein.
          Length = 421

 Score =  138 bits (334), Expect = 5e-33
 Identities = 81/228 (35%), Positives = 121/228 (53%), Gaps = 1/228 (0%)
 Frame = +1

Query: 166 STLIFGIETSCDDTGCXXXXXXXXXXXXSLKSQNLVHLRNGGIIPDVAQDLHRKYIEPTV 345
           S  + GIETSCDDT                 ++  +  + GGI P V    HR+ +   +
Sbjct: 22  SVKVLGIETSCDDTAVAIVNEKREILSSERYTERAIQRQQGGINPSVCALQHRENLPRLI 81

Query: 346 TETLLKANLLMKDISAIAVTVKPGLPLSLAVGMKYAKHLARINAKPIIPIHHMEAHALTV 525
            + L  A    KD+ A+AVTV PGL ++L  G+  A   A+ +  P+IP+HHM AHAL++
Sbjct: 82  EKCLNDAGTSPKDLDAVAVTVTPGLVIALKEGISAAIGFAKKHRLPLIPVHHMRAHALSI 141

Query: 526 RM-EHNVNFPYLVLLISGGHCLLAVVQNINKFLLLGKSIDLAPGELFDKIARRMKLRNVP 702
            + + +V FP+  +L+SGGH L++V +++ KF L G+S+  +PGE  DK+AR++      
Sbjct: 142 LLVDDSVRFPFSAVLLSGGHALISVAEDVEKFKLYGQSVSGSPGECIDKVARQLGDLG-S 200

Query: 703 ELSTMCGGQAVETAALRATNPEMFNLPIPLXTS*RLQF*F*WIKTSVL 846
           E   +  G AVE  A RA+       PI L    +    F  IK S L
Sbjct: 201 EFDGIHVGAAVEILASRASADGHLRYPIFLPNVPKANMNFDQIKGSYL 248


>AC024859-27|AAK29978.4|  337|Caenorhabditis elegans Hypothetical
           protein Y71H2AM.1 protein.
          Length = 337

 Score = 68.5 bits (160), Expect = 6e-12
 Identities = 46/140 (32%), Positives = 70/140 (50%), Gaps = 2/140 (1%)
 Frame = +1

Query: 289 GIIPDVAQDLHRKYIEPTVTETLLKANLLMKD--ISAIAVTVKPGLPLSLAVGMKYAKHL 462
           G  P      HR+ I   V E +  AN+   +  I  IA T  PG+   L VG   A+ L
Sbjct: 39  GFRPTETAQHHRQQIVRLVGEAIKLANIQNPELEIDGIAYTKGPGMGAPLQVGAIVARTL 98

Query: 463 ARINAKPIIPIHHMEAHALTVRMEHNVNFPYLVLLISGGHCLLAVVQNINKFLLLGKSID 642
           +    KPIIP++H   H    R+    + P +VL +SGG+  + +     ++ + G++ID
Sbjct: 99  SLTWKKPIIPVNHCVGHIEMGRLITGADNP-VVLYVSGGNTQV-ISYTKKRYRIFGETID 156

Query: 643 LAPGELFDKIARRMKLRNVP 702
           +A G   D+ AR +KL N P
Sbjct: 157 IAVGNCLDRFARVLKLPNAP 176


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,470,952
Number of Sequences: 27780
Number of extensions: 409884
Number of successful extensions: 921
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 883
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 918
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2202903780
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)