Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_I04
         (877 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     25   0.92 
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    24   1.6  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    23   3.7  

>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 25.0 bits (52), Expect = 0.92
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -2

Query: 687 FHSPSNFIK*FTWCQVYTFT*KEELVYILD 598
           FH  SNFI   T+  VY+ T +  L + LD
Sbjct: 182 FHDASNFIAMETFPSVYSKTRRRALEHTLD 211


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = +3

Query: 573 WWSLLIGCGPKYKQVPPSR 629
           W    + C P  +Q PPSR
Sbjct: 385 WQMSCVACSPPPRQTPPSR 403


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = +3

Query: 405 SKTWFTIKSGCRHEVCQTFSTN 470
           S+ WF I +GC   +    S N
Sbjct: 22  SRDWFRISAGCVSRISNRISRN 43


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 238,181
Number of Sequences: 438
Number of extensions: 5264
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28402218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)