Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_I03
         (940 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_1056 - 22591847-22591936,22592968-22593052,22593135-22593430     29   5.3  
03_02_0916 + 12364557-12364906,12365485-12365592,12365731-12366343     29   7.1  
03_02_0553 - 9420960-9421164,9421634-9421812,9421902-9421970,942...    29   7.1  
02_02_0379 + 9565001-9565515,9565553-9565833,9565884-9566084,956...    29   7.1  
12_01_0030 + 262452-263210,263332-263575,263867-264165                 28   9.3  
10_08_0940 - 21708557-21708733,21709058-21709142,21709330-217095...    28   9.3  
07_01_0276 + 2028983-2029070,2030084-2030151,2030317-2031246,203...    28   9.3  
04_04_1107 - 30954647-30954769,30955052-30955141,30955309-309556...    28   9.3  

>10_08_1056 - 22591847-22591936,22592968-22593052,22593135-22593430
          Length = 156

 Score = 29.1 bits (62), Expect = 5.3
 Identities = 15/26 (57%), Positives = 17/26 (65%), Gaps = 3/26 (11%)
 Frame = +1

Query: 691 SVRSPCFRPLPAYRIPVP---PFSLR 759
           SV +P  RPLPA+ IP P   PFS R
Sbjct: 20  SVSAPAHRPLPAHLIPSPRPLPFSSR 45


>03_02_0916 + 12364557-12364906,12365485-12365592,12365731-12366343
          Length = 356

 Score = 28.7 bits (61), Expect = 7.1
 Identities = 22/56 (39%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
 Frame = +1

Query: 394 PLPRSLTRCARSF--GCGERYQLTQRR*YGYPQNQGITQ--ERTCEQKASKRPGTV 549
           P PRS  RC      GCG R Q TQR     P N  IT   E TC   ++  P  +
Sbjct: 150 PYPRSYYRCTHKLDQGCGARRQ-TQRC-EADPSNYDITYYGEHTCRDPSTIIPTAI 203


>03_02_0553 -
           9420960-9421164,9421634-9421812,9421902-9421970,
           9422452-9422607,9422756-9422968
          Length = 273

 Score = 28.7 bits (61), Expect = 7.1
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = -1

Query: 781 RXXHAXLPEGRKAGQVSGKRXGVGNXESAPXGAFXGGKR 665
           R   A LP+GR   +  G+R G G     P G+  GG+R
Sbjct: 209 RGGPAGLPQGRPRPRGGGRRRGGGGGSGGPGGS--GGRR 245


>02_02_0379 +
           9565001-9565515,9565553-9565833,9565884-9566084,
           9566253-9566309,9566955-9567019,9567199-9567420
          Length = 446

 Score = 28.7 bits (61), Expect = 7.1
 Identities = 20/55 (36%), Positives = 22/55 (40%)
 Frame = +3

Query: 570 FFHRLRPPDEHHKNRRSSQRWRXPDRTIXIPGRLPPXKAPXGALSXFPTPXRLPD 734
           FFH +   D      R S RWR PDR    P    P   P   L+    P  LPD
Sbjct: 136 FFHCVVSGDGSLLVYRLSPRWRSPDRLSITPTTAAP---PATVLASPHAPMPLPD 187


>12_01_0030 + 262452-263210,263332-263575,263867-264165
          Length = 433

 Score = 28.3 bits (60), Expect = 9.3
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +2

Query: 644 QDYXDTRAFAPLESSXRCALXVSDPXPLTGY 736
           QD  DTRA +P  S+      V  P P+T Y
Sbjct: 72  QDISDTRAMSPAPSTASSPSSVPSPPPVTHY 102


>10_08_0940 -
           21708557-21708733,21709058-21709142,21709330-21709551,
           21710640-21710815,21711883-21711946,21712433-21712507,
           21715114-21715199,21715297-21716715
          Length = 767

 Score = 28.3 bits (60), Expect = 9.3
 Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
 Frame = +1

Query: 343 NESAN---ARGEAVCVLGALPLPRSLTRCAR 426
           +ESAN   AR EAV  +G +P+   L RC+R
Sbjct: 434 DESANVDAARSEAVMRVGGIPMLLDLARCSR 464


>07_01_0276 +
           2028983-2029070,2030084-2030151,2030317-2031246,
           2031334-2031415,2031544-2031609,2032606-2033304,
           2033422-2035424,2035599-2036173,2037060-2037223,
           2037306-2037365,2037475-2037839
          Length = 1699

 Score = 28.3 bits (60), Expect = 9.3
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = +3

Query: 573 FHRLRPPDEHHKNRRSSQRWRXPDRTIXIPGRLPP 677
           ++R R  D+ H + R  +RW        + GR PP
Sbjct: 111 WNRWRETDKEHGDTRKLERWSDDSSKYSVDGRRPP 145


>04_04_1107 -
           30954647-30954769,30955052-30955141,30955309-30955617,
           30955732-30955842,30955945-30956379,30956452-30956610,
           30957044-30957994,30959016-30959483
          Length = 881

 Score = 28.3 bits (60), Expect = 9.3
 Identities = 17/41 (41%), Positives = 21/41 (51%)
 Frame = +3

Query: 639 PDRTIXIPGRLPPXKAPXGALSXFPTPXRLPDTCPAFLPSG 761
           P R + IPGR PP  A   A    P P ++P   PA +P G
Sbjct: 55  PRRALPIPGRGPPPAAVLHA--PVPVPVQVP--APARMPCG 91


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,686,000
Number of Sequences: 37544
Number of extensions: 402003
Number of successful extensions: 1133
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1077
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1133
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2694390200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)