Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP13_F_H24
(876 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 113 2e-26
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 57 3e-09
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 55 1e-08
SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 54 4e-08
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 52 1e-07
SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual 52 1e-07
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 48 1e-06
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 46 7e-06
SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101 |Sch... 45 2e-05
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 44 2e-05
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc... 44 2e-05
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 44 4e-05
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos... 43 5e-05
SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity... 41 2e-04
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 40 4e-04
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 40 4e-04
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 40 5e-04
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 40 6e-04
SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog |Schi... 39 8e-04
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 39 0.001
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 39 0.001
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 36 0.006
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 35 0.013
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 35 0.013
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 34 0.023
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 33 0.040
SPBC13A2.01c |||nuclear cap-binding complex small subunit|Schizo... 33 0.053
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch... 33 0.053
SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomy... 33 0.053
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 32 0.12
SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces ... 31 0.16
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 31 0.22
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 30 0.38
SPBC106.12c |||THO complex subunit |Schizosaccharomyces pombe|ch... 30 0.38
SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 29 0.87
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc... 29 0.87
SPCC1827.05c |||nucleolar RNA-binding protein NIFK |Schizosaccha... 29 0.87
SPAC2G11.03c |vps45||vacuolar sorting protein Vps 45|Schizosacch... 29 1.1
SPCC550.02c |cwf5|ecm2|RNA-binding protein Cwf5|Schizosaccharomy... 27 2.7
SPAC1952.05 |gcn5||histone acetyltransferase Gcn5|Schizosaccharo... 27 2.7
SPCC320.06 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||... 27 3.5
SPAC22F8.04 |||triose phosphate transporter |Schizosaccharomyces... 27 4.6
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po... 27 4.6
SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10 |Schizos... 26 6.1
SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces po... 26 8.1
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 113 bits (273), Expect = 2e-26
Identities = 58/147 (39%), Positives = 90/147 (61%), Gaps = 6/147 (4%)
Frame = +1
Query: 142 NNDNFAQDITTDNQLNGNAENGGGDSQDHNSAE-APGRDDDRKLFVGGLSWETTXKELRD 318
+ +N D +NQ + +G +S + N+ E +P +D K+F+GGL+WETT LRD
Sbjct: 123 DGENSKNDNYNENQ-SALTGSGAMESNEDNAEETSPFNREDGKMFIGGLNWETTDDSLRD 181
Query: 319 HFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKAR 498
+F +GE+ V D TGRSRGF F+ FK P+ +++VM+ EH ++ K +DPK+A R
Sbjct: 182 YFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEVMSK-EHHLDGKIIDPKRAIPR 240
Query: 499 H-----GKIFVGGLSSEISDDEIRNFF 564
K+FVGG+ + +++E RNFF
Sbjct: 241 EEQEKTAKMFVGGVPGDCTEEEFRNFF 267
Score = 58.4 bits (135), Expect = 1e-09
Identities = 25/75 (33%), Positives = 44/75 (58%)
Frame = +1
Query: 265 KLFVGGLSWETTXKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 444
K+FVGG+ + T +E R+ F +G + + D +TGR RGF F+ ++ +++ M+
Sbjct: 248 KMFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTYENESAVEATMSQ 307
Query: 445 GEHTINNKKVDPKKA 489
TI+ K V+ K+A
Sbjct: 308 PYITIHGKPVEVKRA 322
Score = 56.4 bits (130), Expect = 5e-09
Identities = 25/57 (43%), Positives = 36/57 (63%)
Frame = +2
Query: 569 EFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPK 739
+FG +L+ + DK + +GF F+T+E+E V + P TI GK V+VKRATPK
Sbjct: 269 QFGRVLDATLMMDKDTGRPRGFGFVTYENESAVEATMSQPYITIHGKPVEVKRATPK 325
Score = 43.6 bits (98), Expect = 4e-05
Identities = 19/57 (33%), Positives = 37/57 (64%)
Frame = +2
Query: 569 EFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPK 739
+FG +L+ + D T + +GF F+TF++ + VN+++ + + + GK +D KRA P+
Sbjct: 185 QFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEVM-SKEHHLDGKIIDPKRAIPR 240
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 57.2 bits (132), Expect = 3e-09
Identities = 27/97 (27%), Positives = 49/97 (50%)
Frame = +1
Query: 166 ITTDNQLNGNAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTXKELRDHFGAYGEIE 345
I ++ +G S ++ ++ LFVG L +ETT +L++HFG G+I
Sbjct: 196 IKSNTDFSGRPSKPANTLSKTASIQSSKKEPSSILFVGNLDFETTDADLKEHFGQVGQIR 255
Query: 346 SINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHT 456
+ + T +TG+ +GF F+ F ++ K M G ++
Sbjct: 256 RVRLMTFEDTGKCKGFGFVDFPDIDTCMKAMELGHNS 292
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 55.2 bits (127), Expect = 1e-08
Identities = 25/64 (39%), Positives = 37/64 (57%)
Frame = +1
Query: 268 LFVGGLSWETTXKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAG 447
+FVG LS+ T +L FG G+I+SI + TDP +GR +GF ++ F +S K +
Sbjct: 368 VFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKKCVEMN 427
Query: 448 EHTI 459
H I
Sbjct: 428 GHFI 431
Score = 49.2 bits (112), Expect = 8e-07
Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 3/81 (3%)
Frame = +1
Query: 244 PGRDDDRK--LFVGGLSWETTXKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAP 417
P +D + +FVG LSW + L F YG I V D +GRS+G+ ++ F+ P
Sbjct: 255 PSQDSNETCTVFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETP 314
Query: 418 ESIDKVMAA-GEHTINNKKVD 477
E+ +AA G I+ + V+
Sbjct: 315 EAAKAAVAANGTKEIDGRMVN 335
Score = 32.7 bits (71), Expect = 0.071
Identities = 15/62 (24%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Frame = +2
Query: 569 EFGTILEVEMPFDKTKNQRKGFCFITFESEQVVN-DLLKTPKRTIGGKEVDVKRATPKPX 745
E+GTI+ + D + KG+ ++ FE+ + + + I G+ V++ + P+P
Sbjct: 285 EYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAKAAVAANGTKEIDGRMVNLDLSNPRPA 344
Query: 746 GP 751
P
Sbjct: 345 NP 346
Score = 30.7 bits (66), Expect = 0.28
Identities = 15/61 (24%), Positives = 26/61 (42%)
Frame = +2
Query: 575 GTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPKPXGPG 754
G I + +P D + KGF ++TF ++ I G+ + +TP+ G
Sbjct: 390 GDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKKCVEMNGHFIAGRPCRLDFSTPRTGGGS 449
Query: 755 R 757
R
Sbjct: 450 R 450
>SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 233
Score = 53.6 bits (123), Expect = 4e-08
Identities = 32/97 (32%), Positives = 55/97 (56%), Gaps = 5/97 (5%)
Frame = +1
Query: 232 SAEAPGRDDDRK--LFVGGLSWETTXKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIV 405
S G+++DRK LFVG L +++ + L+ HF G++ S+ + TD +GR +G+AF+
Sbjct: 80 SKRQKGKNNDRKVILFVGNLPKDSSVETLQLHFKRAGQVPSVRIPTDKTSGRQKGYAFVE 139
Query: 406 FKAPES--IDKVMAAGEHTI-NNKKVDPKKAKARHGK 507
F P++ I K + HTI +K++ + GK
Sbjct: 140 FINPKTDVISKALKF-HHTIYKERKINIELTAGGGGK 175
Score = 29.5 bits (63), Expect = 0.66
Identities = 14/46 (30%), Positives = 27/46 (58%)
Frame = +2
Query: 512 LSEDSAVKSQMMKSETSSXEFGTILEVEMPFDKTKNQRKGFCFITF 649
L +DS+V++ + + + G + V +P DKT ++KG+ F+ F
Sbjct: 99 LPKDSSVETLQLHFKRA----GQVPSVRIPTDKTSGRQKGYAFVEF 140
>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 438
Score = 52.0 bits (119), Expect = 1e-07
Identities = 24/67 (35%), Positives = 37/67 (55%)
Frame = +1
Query: 250 RDDDRKLFVGGLSWETTXKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESID 429
+D R +FVG L++E + L +FG G I+ + + DP T +GFA+I FK +D
Sbjct: 266 QDTKRCVFVGNLAFEAEEEPLWRYFGDCGSIDYVRIVRDPKTNLGKGFAYIQFKDTMGVD 325
Query: 430 KVMAAGE 450
K + E
Sbjct: 326 KALLLNE 332
>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 51.6 bits (118), Expect = 1e-07
Identities = 22/79 (27%), Positives = 41/79 (51%), Gaps = 2/79 (2%)
Frame = +1
Query: 256 DDRKLFVGGLSWETTXKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKV 435
D + ++VG + + T +EL+ HF + G + + + D TG +GFA+I F P +
Sbjct: 53 DAQSVYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFSEPSLVPNA 112
Query: 436 MAAGEHTINNK--KVDPKK 486
+ ++ + KV PK+
Sbjct: 113 LLLNGSMLHERPLKVTPKR 131
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 48.4 bits (110), Expect = 1e-06
Identities = 23/53 (43%), Positives = 33/53 (62%)
Frame = +1
Query: 250 RDDDRKLFVGGLSWETTXKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF 408
RDD L V LS +T +ELRD F +G I+ + + D TGR++GFAF+ +
Sbjct: 198 RDDSATLRVTNLSDDTREEELRDLFRRFGGIQRVYLAKDKETGRAKGFAFVSY 250
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 46.0 bits (104), Expect = 7e-06
Identities = 27/76 (35%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
Frame = +1
Query: 193 NAENGGGDSQDHNSAEAPGRDDDR---KLFVGGLSWETTXKELRDHFGAYGEIESINVKT 363
+ E+ G S D NS RD++ +FV L +E T +EL +HF +G + +
Sbjct: 251 DVEDSGDSSSDKNSINHEIRDNEGLEDTVFVRNLLFECTEQELYNHFRQFGPLAYAKLVK 310
Query: 364 DPNTGRSRGFAFIVFK 411
DP T RS G FI F+
Sbjct: 311 DPATDRSLGRGFIKFR 326
Score = 43.6 bits (98), Expect = 4e-05
Identities = 26/69 (37%), Positives = 38/69 (55%)
Frame = +1
Query: 268 LFVGGLSWETTXKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAG 447
LFV L+++T +L + F G I+ V T+P TG +RG+ F+ F E D AA
Sbjct: 7 LFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLE--DAQRAAK 64
Query: 448 EHTINNKKV 474
E + NKK+
Sbjct: 65 E--LKNKKL 71
>SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 261
Score = 44.8 bits (101), Expect = 2e-05
Identities = 20/53 (37%), Positives = 32/53 (60%)
Frame = +1
Query: 253 DDDRKLFVGGLSWETTXKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFK 411
D + +F+ LS++T ++ F YG IE I V + TG+S G+AF+VF+
Sbjct: 97 DPYKTMFLSRLSYDTKESDIEREFTRYGPIERIRVVRNKVTGKSMGYAFVVFE 149
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 44.4 bits (100), Expect = 2e-05
Identities = 22/82 (26%), Positives = 40/82 (48%)
Frame = +1
Query: 175 DNQLNGNAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTXKELRDHFGAYGEIESIN 354
+++++ N E+ D ++ SA + LFV G++ EL+ F +G + +
Sbjct: 72 EDEVDPNNESTALDKKEPQSAPEGSENLGNDLFVSGIASRMQEDELQQIFSKFGTVTHVR 131
Query: 355 VKTDPNTGRSRGFAFIVFKAPE 420
+ +P T SRGF F+ F E
Sbjct: 132 IMREPVTKASRGFGFLSFSTVE 153
Score = 30.3 bits (65), Expect = 0.38
Identities = 20/85 (23%), Positives = 41/85 (48%), Gaps = 6/85 (7%)
Frame = +2
Query: 524 SAVKSQMMKSETSSX--EFGTILEVEMPFDKTKNQRKGFCFITFES-EQVVNDLLKTPKR 694
S + S+M + E +FGT+ V + + +GF F++F + E+ + + +
Sbjct: 106 SGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLSFSTVEEATSAIDNLNSQ 165
Query: 695 TIGGKEVDV---KRATPKPXGPGRH 760
G+ ++V KR+ P PG++
Sbjct: 166 EFYGRVLNVQKAKRSRPHSPTPGKY 190
>SPBC18H10.04c |sce3|tif48|translation initiation factor
eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
Length = 388
Score = 44.4 bits (100), Expect = 2e-05
Identities = 28/100 (28%), Positives = 46/100 (46%)
Frame = +1
Query: 199 ENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTXKELRDHFGAYGEIESINVKTDPNTG 378
E G G ++ P + VG LS++ T +L D FG + SI + DP T
Sbjct: 74 EGGMGSGYQRDAIPIPS-EPPFTAHVGNLSFDLTENDLGDFFGE--GVTSIRLVIDPLTE 130
Query: 379 RSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKAR 498
RSRGF ++ F+ +++ +A + + V A+ R
Sbjct: 131 RSRGFGYVEFETADTLSAALALSGEDLMGRPVRITVAEPR 170
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 43.6 bits (98), Expect = 4e-05
Identities = 20/57 (35%), Positives = 31/57 (54%)
Frame = +1
Query: 268 LFVGGLSWETTXKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 438
LF+ L E + L+ F A+G I S + TD G+S+GF F+ + PE +K +
Sbjct: 366 LFIKNLQDEVDDERLKAEFSAFGTITSAKIMTD-EQGKSKGFGFVCYTTPEEANKAV 421
Score = 38.7 bits (86), Expect = 0.001
Identities = 29/107 (27%), Positives = 46/107 (42%), Gaps = 8/107 (7%)
Frame = +1
Query: 268 LFVGGLSWETTXKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAG 447
L+VG L T L + F + G + SI V D T RS G+A++ F E +K +
Sbjct: 82 LYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALDEL 141
Query: 448 EHTINN--------KKVDPKKAKARHGKIFVGGLSSEISDDEIRNFF 564
+T+ + DP K G +F+ L I + + + F
Sbjct: 142 NYTLIKGRPCRIMWSQRDPSLRKMGTGNVFIKNLDPAIDNKALHDTF 188
>SPCC306.04c |set1||histone lysine methyltransferase
Set1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 920
Score = 43.2 bits (97), Expect = 5e-05
Identities = 23/68 (33%), Positives = 38/68 (55%)
Frame = +1
Query: 223 DHNSAEAPGRDDDRKLFVGGLSWETTXKELRDHFGAYGEIESINVKTDPNTGRSRGFAFI 402
D+N + G + ++FV +S T ++LR HF ++GE+ +++K +P TG S G I
Sbjct: 82 DYNE-NSLGPEPPTQVFVSNISPLVTSEQLRYHFKSFGEVFDLDLKLNPYTGTSLGLCCI 140
Query: 403 VFKAPESI 426
F SI
Sbjct: 141 SFDKRSSI 148
>SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity
factor complex subunit Ctf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 363
Score = 41.1 bits (92), Expect = 2e-04
Identities = 18/75 (24%), Positives = 39/75 (52%)
Frame = +1
Query: 268 LFVGGLSWETTXKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAG 447
+FVG + ++ + +++ + F G +++ + DP TG +G+ F F E+ A
Sbjct: 9 VFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFDSET----TAMA 64
Query: 448 EHTINNKKVDPKKAK 492
+NN ++ P+K +
Sbjct: 65 VRKLNNSELGPRKIR 79
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 40.3 bits (90), Expect = 4e-04
Identities = 17/56 (30%), Positives = 31/56 (55%)
Frame = +1
Query: 256 DDRKLFVGGLSWETTXKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPES 423
D +++G L ++ ++ F +GE IN+ D TG+S+GFAF+ ++ S
Sbjct: 29 DSAYIYIGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGKSKGFAFLKYEDQRS 84
Score = 28.3 bits (60), Expect = 1.5
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = +2
Query: 569 EFGTILEVEMPFDKTKNQRKGFCFITFESEQ 661
EFG +++ + DK + KGF F+ +E ++
Sbjct: 53 EFGEPVDINLVRDKETGKSKGFAFLKYEDQR 83
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 40.3 bits (90), Expect = 4e-04
Identities = 30/99 (30%), Positives = 46/99 (46%), Gaps = 8/99 (8%)
Frame = +1
Query: 214 DSQDHNSAE---APGRD-DDRKLFVGGLSWETTXKELRDHFGAYGEIESINVKTDPNTGR 381
D+ H SAE P + DD ++FVG LS T E+R F G + + +
Sbjct: 24 DAAVHASAEQSNTPAQQADDFRVFVGRLSTSTKKSEIRSLFETVGTVRKVTIPFRRVRRG 83
Query: 382 SR----GFAFIVFKAPESIDKVMAAGEHTINNKKVDPKK 486
+R G AF+ F E +DK + T+N K +D ++
Sbjct: 84 TRLVPSGIAFVTFNNQEDVDKAI----ETLNGKTLDDRE 118
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 39.9 bits (89), Expect = 5e-04
Identities = 20/62 (32%), Positives = 32/62 (51%)
Frame = +1
Query: 256 DDRKLFVGGLSWETTXKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKV 435
D R +FV L+ T +EL D F G + + D +GRS+G A++ F +S+
Sbjct: 238 DRRTVFVSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGRSKGVAYVEFCHEDSVQAA 297
Query: 436 MA 441
+A
Sbjct: 298 IA 299
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 39.5 bits (88), Expect = 6e-04
Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Frame = +1
Query: 268 LFVGGLSWETTXKELRDHFGAYGE-IESINVKTDPNTGRSRGFAFIVFKAPESID-KVMA 441
LFVG L + L D F A G+ +++ V D N GRS+G+ F+ + + E+ D + A
Sbjct: 101 LFVGNLDPLVDERVLYDTFSALGQLVKAPQVARDEN-GRSKGYGFVSYDSFETADAAIEA 159
Query: 442 AGEHTINNKKVDPKKAKARHGK 507
+ NK + A R GK
Sbjct: 160 MNNQFLMNKPITVSYAFKREGK 181
>SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 137
Score = 39.1 bits (87), Expect = 8e-04
Identities = 19/48 (39%), Positives = 31/48 (64%)
Frame = +1
Query: 268 LFVGGLSWETTXKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFK 411
LF+ LS++ T +E+ D FG YG + I + NT ++RG AF+V++
Sbjct: 14 LFIKNLSFKITAEEMYDLFGRYGPVRQIRL---GNTVQTRGTAFVVYE 58
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 38.7 bits (86), Expect = 0.001
Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 4/60 (6%)
Frame = +1
Query: 268 LFVGGLSWETTXKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFK----APESIDKV 435
++VG L W T+ + L D F G + + +P TGRS+GF + F+ A SI+K+
Sbjct: 282 IYVGNLPWATSDRNLLDLFTDIGSVIRARIAYEP-TGRSKGFGVVQFENENDAASSIEKL 340
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 38.7 bits (86), Expect = 0.001
Identities = 17/81 (20%), Positives = 42/81 (51%)
Frame = +1
Query: 256 DDRKLFVGGLSWETTXKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKV 435
+ R+L+V + ++ K++ F YG++ES+ + N + +GF ++V + +
Sbjct: 755 EGRELYVTNIDFKVNEKDVETFFRDYGQVESVRIPKRFN--QHKGFGYVVMTTNQDAENA 812
Query: 436 MAAGEHTINNKKVDPKKAKAR 498
++A + N+ ++ +K R
Sbjct: 813 LSAAGKQLGNRVLNVVLSKPR 833
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 36.3 bits (80), Expect = 0.006
Identities = 22/55 (40%), Positives = 30/55 (54%)
Frame = +1
Query: 268 LFVGGLSWETTXKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDK 432
LFV L+ T ++L F +G+I S V D TG S +AFI F ES++K
Sbjct: 246 LFVCKLNPVTQDEDLELIFSRFGKIISCQVIRDKETGDSLQYAFIEFDNKESVEK 300
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 35.1 bits (77), Expect = 0.013
Identities = 27/94 (28%), Positives = 41/94 (43%), Gaps = 3/94 (3%)
Frame = +1
Query: 214 DSQDHNSAEAPGRD-DDRKLFVGGLSWE--TTXKELRDHFGAYGEIESINVKTDPNTGRS 384
DS +S P D L+V L T +L D F +G I S + PN+G S
Sbjct: 365 DSLRESSPSIPNSPIDPSNLYVKNLDDTVITCKSQLEDLFSPFGSILSSMLACYPNSGIS 424
Query: 385 RGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKK 486
+G+ F+ F+ E+ + T+N V K+
Sbjct: 425 KGYGFVAFRQIEA----AVRAKDTLNGMMVGKKR 454
Score = 32.7 bits (71), Expect = 0.071
Identities = 27/111 (24%), Positives = 49/111 (44%), Gaps = 15/111 (13%)
Frame = +1
Query: 223 DHNSAEAPGR--DDDRKLFVGGLSWETTXKELRDHFGAYGEIESI----------NVKTD 366
+++ PG+ D+ ++VG + + +E+ HF YG++ESI K
Sbjct: 2 NNSKLSVPGQYEDESSTIYVGNIDSRLSDEEIIKHFSKYGQVESIFRRLLDSFYPKEKAK 61
Query: 367 PNTGRSRG--FAFIVFKAPESIDKVMA-AGEHTINNKKVDPKKAKARHGKI 510
P G + F+ F ESI++V+ A T+ +K+ K K+
Sbjct: 62 PFKPPKNGVQYGFVKFVNAESIEEVLKDAKGMTLGQRKLTIKARVVNPAKL 112
Score = 27.1 bits (57), Expect = 3.5
Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = +1
Query: 457 INNKKVD-PKKAKARHGKIFVGGLSSEISDDEIRNFF 564
+NN K+ P + + I+VG + S +SD+EI F
Sbjct: 1 MNNSKLSVPGQYEDESSTIYVGNIDSRLSDEEIIKHF 37
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 35.1 bits (77), Expect = 0.013
Identities = 13/50 (26%), Positives = 28/50 (56%)
Frame = +1
Query: 268 LFVGGLSWETTXKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAP 417
++VG + +E +++ D F G ++S + DP +G+ +G+ F + P
Sbjct: 7 VYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGFCEYHDP 56
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 34.3 bits (75), Expect = 0.023
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +2
Query: 572 FGTILEVEMPFDKTKNQRKGFCFITF-ESEQVVNDLLKTPKRTIGGKEVDV 721
FG + +V MP DK N KGF +I F +++ V L+ + G+ + V
Sbjct: 346 FGQLEQVHMPIDKKTNNPKGFAYIDFHDADDAVRAYLELDAKPFQGRLLHV 396
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 33.5 bits (73), Expect = 0.040
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = +1
Query: 268 LFVGGLSWETTXKELRDHFGA-YGEIESINVKTDPNTGRSRGFAFIVF 408
+FVG LS ++ F + Y +S + TDP T SRG+ F+ F
Sbjct: 188 IFVGDLSPNVNEFDVYSLFASRYNSCKSAKIMTDPQTNVSRGYGFVRF 235
Score = 28.7 bits (61), Expect = 1.1
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = +1
Query: 478 PKKAKARHGKIFVGGLSSEISDDEIRNFF 564
P+ A + +FVGGLS +S++E++ F
Sbjct: 295 PQFADTANSTVFVGGLSKFVSEEELKYLF 323
Score = 27.5 bits (58), Expect = 2.7
Identities = 16/37 (43%), Positives = 22/37 (59%)
Frame = +1
Query: 268 LFVGGLSWETTXKELRDHFGAYGEIESINVKTDPNTG 378
+FVGGLS + +EL+ F +GEI + VK P G
Sbjct: 305 VFVGGLSKFVSEEELKYLFQNFGEI--VYVKIPPGKG 339
>SPBC13A2.01c |||nuclear cap-binding complex small
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 182
Score = 33.1 bits (72), Expect = 0.053
Identities = 25/101 (24%), Positives = 46/101 (45%), Gaps = 2/101 (1%)
Frame = +1
Query: 268 LFVGGLSWETTXKELRDHFGAYGEIESINVKTDPNTGRSRGFAFI-VFKAPESIDKVMAA 444
++VG LS+ TT +++ F GEI I + D T GF F+ F+ +++D +
Sbjct: 34 VYVGNLSFYTTEEQIYALFSKCGEIRRIIMGVDRFTKTPCGFCFVEYFENQDALDSLKYI 93
Query: 445 GEHTINNKKVDPKKAKA-RHGKIFVGGLSSEISDDEIRNFF 564
+++ + + G+ + G S DE+R F
Sbjct: 94 SRTSLDERIIRADLDHGYEEGRQYGRGASGGQVRDEMREEF 134
>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 33.1 bits (72), Expect = 0.053
Identities = 17/49 (34%), Positives = 24/49 (48%)
Frame = +1
Query: 265 KLFVGGLSWETTXKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFK 411
+LFVG L + + L F Y + V D G++RGF F+ FK
Sbjct: 31 RLFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRD-REGKTRGFGFVSFK 78
>SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 478
Score = 33.1 bits (72), Expect = 0.053
Identities = 15/56 (26%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Frame = +1
Query: 259 DRKLFVGGLSWETTXKELRDHFGAYGEIESINV--KTDPNTGRSRGFAFIVFKAPE 420
+++++VGGLS +L F +G + ++ + K+ P G + FA++ F+ E
Sbjct: 4 EKRIYVGGLSSSIESSDLESRFSRFGSVSNLEIINKSTP-VGTIQRFAYLNFRTDE 58
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 31.9 bits (69), Expect = 0.12
Identities = 16/69 (23%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Frame = +1
Query: 304 KELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAP-ESIDKVMAAGEHTINNKKVDP 480
++L + F +G I+S + + P+T S+G+ F+ F P E++ + K++
Sbjct: 435 QQLEELFSKFGRIKSCTLASYPSTEISKGYGFVSFSHPFEAVQAINTLNGVLFGKKRLFV 494
Query: 481 KKAKARHGK 507
A+ R +
Sbjct: 495 NYAEKREDR 503
>SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 199
Score = 31.5 bits (68), Expect = 0.16
Identities = 16/55 (29%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Frame = +1
Query: 256 DDRKLFVGGLSWETTXKELRDHF-GAYGEIESINVKTDPNTGRSRGFAFIVFKAP 417
++ K+ V L + T ++++ F + G + +++ PN GRS+G A I+F P
Sbjct: 53 EESKIIVSNLPTDVTEAQVKELFVKSIGPCKRVSLAYGPN-GRSKGIATIIFSRP 106
>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 654
Score = 31.1 bits (67), Expect = 0.22
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +1
Query: 262 RKLFVGGLSWETTXKELRDHFGAYGEIESINVKTDPN 372
R +F+G L KE+ + FG +G+IE I + + N
Sbjct: 299 RNVFIGNLPSSYHEKEIEEAFGKFGKIEHIKILSKKN 335
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 30.3 bits (65), Expect = 0.38
Identities = 17/74 (22%), Positives = 33/74 (44%), Gaps = 2/74 (2%)
Frame = +1
Query: 253 DDDRKLFVGGLSWETTXKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDK 432
D K+++ L ++ + +G++ S + + G S+GF F FK P +
Sbjct: 307 DSKDKIYISNLPLNLGEDQVVELLKPFGDLLSFQLIKNIADGSSKGFCFCEFKNPSDAEV 366
Query: 433 VMAA--GEHTINNK 468
++ G+ T NK
Sbjct: 367 AISGLDGKDTYGNK 380
>SPBC106.12c |||THO complex subunit |Schizosaccharomyces pombe|chr
2|||Manual
Length = 274
Score = 30.3 bits (65), Expect = 0.38
Identities = 26/96 (27%), Positives = 46/96 (47%), Gaps = 2/96 (2%)
Frame = +2
Query: 455 PSTTRK*TQRRLKHDMGRFLSEDSAVKSQMMKSETSSX-EFGTILEVEMPFDKTKNQRKG 631
P TT Q+R +H RF + Q+++ + S E + V M +D+ + +G
Sbjct: 70 PRTTH--LQKR-QHSENRFGVRVENLHYQVLEKDVLSLFENFHPIRVIMNYDRA-GRSEG 125
Query: 632 FCFITFESEQVVNDLLKTPKRT-IGGKEVDVKRATP 736
C + FE+ Q D KT + T + G E+ + + +P
Sbjct: 126 SCDVYFETSQDAEDAQKTLQSTNLKGSEIQISKKSP 161
>SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 243
Score = 29.1 bits (62), Expect = 0.87
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Frame = +2
Query: 572 FGTILEVEMPFDKTKNQRKGFCFITF-ESEQVVNDLLKTPKRTIGGKE--VDVKR 727
+G I + MP K KG+C+I + +Q N + K + G+E V +KR
Sbjct: 122 YGLIDHIFMPIYKKSELNKGYCYIEYVYHDQAANAVDKMNNAELDGEELFVSIKR 176
>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 529
Score = 29.1 bits (62), Expect = 0.87
Identities = 14/48 (29%), Positives = 23/48 (47%)
Frame = +1
Query: 229 NSAEAPGRDDDRKLFVGGLSWETTXKELRDHFGAYGEIESINVKTDPN 372
N A A R +++G T + L++ F +GEIE +N + N
Sbjct: 403 NIALAVAGGASRNIYIGNADDSLTIERLKEDFEEFGEIEYVNFFREKN 450
Score = 27.5 bits (58), Expect = 2.7
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +1
Query: 262 RKLFVGGLSWETTXKELRDHFGAYGEIESINVKTDPN 372
R +F+G L T E+R+ +G I+ I + T+ N
Sbjct: 206 RNVFLGNLPNGITEDEIREDLEPFGPIDQIKIVTERN 242
>SPCC1827.05c |||nucleolar RNA-binding protein NIFK
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 276
Score = 29.1 bits (62), Expect = 0.87
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +2
Query: 569 EFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKT 685
+FG +L + M ++ K + FI FES V N + +T
Sbjct: 127 QFGPVLRLRMSRNRKTGSSKHYAFIEFESLDVANVVAET 165
>SPAC2G11.03c |vps45||vacuolar sorting protein Vps
45|Schizosaccharomyces pombe|chr 1|||Manual
Length = 558
Score = 28.7 bits (61), Expect = 1.1
Identities = 15/72 (20%), Positives = 32/72 (44%)
Frame = +1
Query: 313 RDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAK 492
R++ GE+E V +P + ++F K+ A +++ +++DP K
Sbjct: 344 RENLLEVGEVEQSLVCNEPQSTDFNDIQRLLFSNISENTKLRLAALYSLRFERIDPAKVS 403
Query: 493 ARHGKIFVGGLS 528
A + GG++
Sbjct: 404 ALQQMLIAGGVN 415
>SPCC550.02c |cwf5|ecm2|RNA-binding protein Cwf5|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 354
Score = 27.5 bits (58), Expect = 2.7
Identities = 27/106 (25%), Positives = 49/106 (46%), Gaps = 1/106 (0%)
Frame = +1
Query: 238 EAPGRDDDRKLFVGGLSWETTXKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAP 417
E P LF+ G+ E ++R HF YG ++S+ + R++ AF+ FK
Sbjct: 204 EPPKDKKIASLFLIGVEDELADYKIRKHFEQYGPLKSVVC-----SHRAK-CAFVNFKTR 257
Query: 418 ESIDKVMAAGEHTINNKKVDPKKAKARHGK-IFVGGLSSEISDDEI 552
S + +AA N ++ + K + GK +GG E+ + ++
Sbjct: 258 SSAE--IAAAASPDGNVVIEGFRLKVQWGKPRSLGGPEGEVRNAKL 301
>SPAC1952.05 |gcn5||histone acetyltransferase
Gcn5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 454
Score = 27.5 bits (58), Expect = 2.7
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = +1
Query: 385 RGFAFIVFKAPESIDKVMAAGEHTINNKK 471
RGFA IVF A S ++V G H +N+ K
Sbjct: 187 RGFAEIVFCAIASNEQVRGYGSHLMNHLK 215
>SPCC320.06 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 289
Score = 27.1 bits (57), Expect = 3.5
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = -2
Query: 275 TKSFLSSSRPGASALL*SCESPPPFSAFPLSWLSVVIS 162
T SFL + R +L C S P +AF W+ ++ S
Sbjct: 205 TSSFLETQRSYRIYMLIDCPSNPKATAFARYWMHLICS 242
>SPAC22F8.04 |||triose phosphate transporter |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 383
Score = 26.6 bits (56), Expect = 4.6
Identities = 18/35 (51%), Positives = 22/35 (62%)
Frame = -1
Query: 741 GFGVARFTSTSFPPIVLLGVLSKSFTTCSDSNVMK 637
GFGV RF S P ++LGV S SFTT +S +K
Sbjct: 219 GFGV-RFESHVAPIGIILGVWS-SFTTAIESVAVK 251
>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 26.6 bits (56), Expect = 4.6
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +1
Query: 259 DRKLFVGGLSWETTXKELRDHFGAYGEI 342
+ +LFVG + + T +++ D F YG+I
Sbjct: 3 ETRLFVGRIPPQATREDMMDFFKGYGQI 30
>SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1649
Score = 26.2 bits (55), Expect = 6.1
Identities = 21/88 (23%), Positives = 41/88 (46%)
Frame = -1
Query: 606 SKGISTSKIVPNSXEEVSDFII*DFTAESSDKNLPMSCFSLLWVYFLVVDGVFTSSHDLV 427
SK + + ++P+ +S++ ++ L M C +++ F +F S ++V
Sbjct: 1171 SKVSALTALIPDVTYNISNY------SDEETTQLAMDCLAVMAKRFSASPELFISPIEVV 1224
Query: 426 Y*LWGLKHNEGKPS*SACVWICLYINTL 343
+GLK++ SA V I + NTL
Sbjct: 1225 SGPYGLKNSARDVQVSAIVCITVLTNTL 1252
>SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 25.8 bits (54), Expect = 8.1
Identities = 15/54 (27%), Positives = 24/54 (44%)
Frame = -1
Query: 492 FSLLWVYFLVVDGVFTSSHDLVY*LWGLKHNEGKPS*SACVWICLYINTLYFTV 331
F+LL L + GV Y ++ + H+ G P WICL+ +F +
Sbjct: 85 FALLSSQPLCIVGVTGPITVFNYTVYDIMHDRGTPYFPFLCWICLWSMIFHFII 138
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,028,600
Number of Sequences: 5004
Number of extensions: 59401
Number of successful extensions: 245
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 210
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 240
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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