Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_H23
         (903 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1006 - 23484861-23485409,23486327-23486488,23486584-23487165     30   2.9  
08_01_0156 - 1233431-1233925                                           29   3.8  
12_02_0692 - 22197582-22198214,22198761-22198935,22199089-221991...    29   5.1  
03_02_0916 + 12364557-12364906,12365485-12365592,12365731-12366343     29   6.7  
07_03_0697 + 20759176-20759817,20760592-20760708,20761422-207616...    28   8.8  
06_03_0218 + 18219956-18220555                                         28   8.8  
03_06_0149 - 31987183-31987630,31987813-31987874                       28   8.8  
03_04_0061 - 16949038-16950006                                         28   8.8  

>08_02_1006 - 23484861-23485409,23486327-23486488,23486584-23487165
          Length = 430

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 16/40 (40%), Positives = 22/40 (55%)
 Frame = -2

Query: 692 SRGKRLVSL*SCRVSPPLT*ASIFVMLVQGGGAYGKTPAT 573
           SRGK L+S  + R  PP   + + V+ + GGG  G  P T
Sbjct: 25  SRGKSLLSPSTPRSPPPSYGSIVTVLSIDGGGVRGIIPGT 64


>08_01_0156 - 1233431-1233925
          Length = 164

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 21/67 (31%), Positives = 29/67 (43%), Gaps = 2/67 (2%)
 Frame = -2

Query: 830 LGAXDLXRTEIPTA*AMRKRHASRREK--GGQVSGKRQGRNRRAHEGASRGKRLVSL*SC 657
           LG  D   TE+  A A     A+R E+  GG   G R G   RA +   +G     +   
Sbjct: 89  LGDADATATEVDAAAAAEAEAAARGERGDGGGDGGGRAGGRGRARDEREKGAAADRVLGV 148

Query: 656 RVSPPLT 636
           R SP ++
Sbjct: 149 RASPTVS 155


>12_02_0692 -
           22197582-22198214,22198761-22198935,22199089-22199185,
           22199359-22199473,22199546-22199633,22199972-22200063,
           22200138-22200629,22201025-22201048,22201348-22203489
          Length = 1285

 Score = 29.1 bits (62), Expect = 5.1
 Identities = 17/54 (31%), Positives = 26/54 (48%)
 Frame = +2

Query: 608 GRASQKSTLKSEVAKPDRTIKIPGVSPWKLPRALSCSDPAAYRIPVRLSPFGKR 769
           G  S K   ++   K  +  + P  +P  LPRAL+    AA R+P+   P  +R
Sbjct: 161 GSGSGKGNHRNRKRKSHQQRQSPAAAPSLLPRALALLADAAGRLPLGEHPDARR 214


>03_02_0916 + 12364557-12364906,12365485-12365592,12365731-12366343
          Length = 356

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 22/56 (39%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
 Frame = +3

Query: 408 PLPRSLTRCARSF--GCGERYQLTQRR*YGYPQNQGITQ--EXTCEQKASKRPXTV 563
           P PRS  RC      GCG R Q TQR     P N  IT   E TC   ++  P  +
Sbjct: 150 PYPRSYYRCTHKLDQGCGARRQ-TQRC-EADPSNYDITYYGEHTCRDPSTIIPTAI 203


>07_03_0697 +
           20759176-20759817,20760592-20760708,20761422-20761696,
           20761906-20762068,20762293-20762421,20762989-20763713,
           20763853-20764081
          Length = 759

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +3

Query: 582 RFSIGSAPLDEHHKNRRSSQRWRNP 656
           RFS  SAP+D+H + RR      NP
Sbjct: 132 RFSSSSAPVDKHGRRRRKKGGRENP 156


>06_03_0218 + 18219956-18220555
          Length = 199

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
 Frame = -2

Query: 764 SRREKGGQVSG--KRQGRNRRAHEGASRGKRLVS 669
           +RRE+  + +G  KR+GR R    G  RGKR  S
Sbjct: 106 ARRERRLEAAGAEKREGRRRGGSSGGLRGKRRAS 139


>03_06_0149 - 31987183-31987630,31987813-31987874
          Length = 169

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -2

Query: 785 AMRKRHASRREKGGQVSGKRQGRNRRAHEGASRG 684
           A+ + H   R +   +  +R+GR R AHEG   G
Sbjct: 76  AVARGHGLERLQEAGIEAERRGRRRNAHEGIKIG 109


>03_04_0061 - 16949038-16950006
          Length = 322

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +2

Query: 659 RTIKIPGVSPWKLPRALSCSDPAAYRIPVRLSPFGKRGA 775
           RT+K PG+   ++PRA+  + P  Y   VR +   +R A
Sbjct: 255 RTMKGPGLGGARVPRAVFRASPRRYYAAVRTARKARRSA 293


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,445,119
Number of Sequences: 37544
Number of extensions: 424980
Number of successful extensions: 1242
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1206
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1242
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2553813320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)