Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP13_F_H22
(885 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_04_0347 + 20479682-20479753,20480136-20480813,20481143-204821... 33 0.30
12_01_0027 - 225670-225870,225989-226126,226315-226392,226523-22... 32 0.70
11_01_0027 - 199196-199396,199514-199651,200207-200284,200419-20... 32 0.70
11_06_0656 + 25926192-25926289,25927530-25927659,25928248-259282... 31 0.93
02_01_0697 + 5209325-5209557,5209690-5209749,5209894-5210038,521... 31 1.6
02_04_0107 - 19804730-19805044 30 2.1
04_04_1073 - 30606472-30606515,30606897-30606988,30607152-306072... 30 2.8
01_05_0710 + 24492337-24493053 29 3.8
10_07_0132 + 13263577-13263732,13265391-13265456,13265607-132657... 29 6.6
07_03_1782 + 29477748-29478169,29478257-29478413,29478518-294786... 28 8.7
>05_04_0347 +
20479682-20479753,20480136-20480813,20481143-20482195,
20482345-20482406,20482491-20482541,20482635-20482719,
20483253-20483342,20483472-20483563,20483704-20483728
Length = 735
Score = 33.1 bits (72), Expect = 0.30
Identities = 29/84 (34%), Positives = 34/84 (40%), Gaps = 8/84 (9%)
Frame = +2
Query: 581 PIIGDGRPSVPLYENKCMPTLGERRPLSVE------TNVGPVRPRSLPHARPRAR--AVL 736
P+ D P C P+ ERRP + E V P RP S P+ RP R A +
Sbjct: 318 PVTRDSSRKAPEVATMCRPSTAERRPATRELAPKQANTVVPCRP-STPNRRPMTRELAPV 376
Query: 737 HRGRAGRHLXGLAEMYAPKTRGTA 808
H A AE P TRG A
Sbjct: 377 HSSIATPRRPSTAER-RPITRGMA 399
>12_01_0027 -
225670-225870,225989-226126,226315-226392,226523-226708,
226853-226945,227797-227863,228660-228964
Length = 355
Score = 31.9 bits (69), Expect = 0.70
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = -1
Query: 522 HLVAATEVVESVAGQLFRRQKRNGPL-IKGFQTFLFTTHVGHIRKEVECVV 373
HLV AT+ V G+ +R +++GPL + F L + V H +V VV
Sbjct: 285 HLVEATKAARPVLGRYYREPEKSGPLPLHLFGVLLRSLRVDHFVSDVGDVV 335
>11_01_0027 -
199196-199396,199514-199651,200207-200284,200419-200604,
200754-200846,201665-201731,202374-202675
Length = 354
Score = 31.9 bits (69), Expect = 0.70
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = -1
Query: 522 HLVAATEVVESVAGQLFRRQKRNGPL-IKGFQTFLFTTHVGHIRKEVECVV 373
HLV AT+ V G+ +R +++GPL + F L + V H +V VV
Sbjct: 284 HLVEATKAARPVLGRYYREPEKSGPLPLHLFGVLLRSLRVDHFVSDVGDVV 334
>11_06_0656 +
25926192-25926289,25927530-25927659,25928248-25928294,
25929274-25929388,25929504-25929753,25930079-25930239,
25930372-25930567,25930672-25930836,25930918-25931070,
25931160-25931248,25931385-25931423,25931460-25931681,
25933503-25934165
Length = 775
Score = 31.5 bits (68), Expect = 0.93
Identities = 22/54 (40%), Positives = 23/54 (42%), Gaps = 3/54 (5%)
Frame = +2
Query: 656 PLSVETNVGPVRPRSLPHARPRARAVLHRGRAGRHLXGL---AEMYAPKTRGTA 808
PL G R R ARP AR RGR GR G AE AP+ G A
Sbjct: 651 PLDQAAGAGQRRGRRGAGARPAARGRCRRGRRGRAAGGATVSAEARAPRDGGAA 704
>02_01_0697 +
5209325-5209557,5209690-5209749,5209894-5210038,
5210149-5210306,5210990-5211071,5211154-5211220,
5211302-5211347,5211441-5211606,5211729-5211814,
5211916-5211996,5212084-5212144
Length = 394
Score = 30.7 bits (66), Expect = 1.6
Identities = 29/86 (33%), Positives = 38/86 (44%), Gaps = 1/86 (1%)
Frame = +2
Query: 494 STTSVAATRCAVLSVR*KS*GGSKATILLPIIGDGRPSVPLYENKCMPTLGER-RPLSVE 670
+TT+ AA AV+++ K T++L GD P+ P E T E RPL
Sbjct: 2 ATTAAAAAEEAVVAL-------DKETLMLMGCGDAPPAAPCAE---WETFKENVRPLKRG 51
Query: 671 TNVGPVRPRSLPHARPRARAVLHRGR 748
NVG + HA P RA L R
Sbjct: 52 RNVGLLNRALKAHADPAQRAALLAAR 77
>02_04_0107 - 19804730-19805044
Length = 104
Score = 30.3 bits (65), Expect = 2.1
Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Frame = +2
Query: 635 PTLGERRPLSVETNVGPVRPRSLPHARPRARA--VLHRGRAGRHLXG 769
P+L RRP + +P P RP A A + +RGR GRH G
Sbjct: 3 PSLCRRRPFGIRR--AGAQPPLAPPLRPTAEATVICNRGRQGRHHQG 47
>04_04_1073 -
30606472-30606515,30606897-30606988,30607152-30607243,
30607362-30607469,30607614-30607748,30607826-30607871,
30608320-30608420,30608512-30608649,30608721-30608819,
30608920-30609036,30609941-30610102,30610271-30610330,
30611120-30611216,30611238-30611296,30611364-30611480,
30611922-30612020,30612115-30612180,30612405-30612542,
30612659-30612742,30612820-30612892,30612937-30612992,
30613074-30613182,30613253-30613335,30613406-30613489,
30613679-30613750,30613827-30613904,30613984-30614067,
30614142-30614212,30614497-30614566,30614866-30614955,
30615046-30615177,30615250-30615350,30615634-30615691,
30615762-30615878,30617981-30618133
Length = 1094
Score = 29.9 bits (64), Expect = 2.8
Identities = 21/71 (29%), Positives = 38/71 (53%)
Frame = -2
Query: 248 ITNVAAAPFLATFVNSIGIFFLFFSNA*NVYSYVFV*SLTLVLQKQNSMKFQNVNAARQE 69
I VAAA LA + + GI ++ A ++ + V +T + S++FQN+N +Q
Sbjct: 201 ILMVAAAVSLALGITTEGIKEGWYDGASIAFAVLLVVVVTATSDYKQSLQFQNLNEEKQ- 259
Query: 68 PSSNLKKQILR 36
N+K +++R
Sbjct: 260 ---NIKLEVVR 267
>01_05_0710 + 24492337-24493053
Length = 238
Score = 29.5 bits (63), Expect = 3.8
Identities = 23/63 (36%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Frame = +2
Query: 566 ATILLPIIGDGRPSVPLYENKC-MPTLGERRPLSVETNVGPVRPRSLPHARPRARAVLHR 742
A +LLP + P PL + MPTL L P+RP LP A P +L R
Sbjct: 73 AALLLPGSTERLPFSPLAAHLASMPTLTPAFALLTAIRHHPLRPSPLPLATPLLGHLLSR 132
Query: 743 GRA 751
RA
Sbjct: 133 RRA 135
>10_07_0132 +
13263577-13263732,13265391-13265456,13265607-13265705,
13267020-13267084,13267210-13267294,13267389-13267422,
13267539-13267642,13268085-13268408,13269090-13269605
Length = 482
Score = 28.7 bits (61), Expect = 6.6
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +2
Query: 599 RPSVPLYENKCMPTLGERRP 658
+P V LY +KC +LG RRP
Sbjct: 76 QPCVGLYSDKCTSSLGRRRP 95
>07_03_1782 +
29477748-29478169,29478257-29478413,29478518-29478610,
29478753-29478938,29479107-29479187,29479788-29479925,
29480044-29480208
Length = 413
Score = 28.3 bits (60), Expect = 8.7
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = -1
Query: 522 HLVAATEVVESVAGQLFRRQKRNGP 448
HL+ ATE + V G+ +R ++GP
Sbjct: 355 HLIEATEAAKGVMGKYYREPDKSGP 379
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,202,803
Number of Sequences: 37544
Number of extensions: 432978
Number of successful extensions: 1102
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1061
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1102
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2503236492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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