Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_H21
         (882 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1789 - 29527145-29527204,29527277-29527358,29527457-295275...    29   6.5  

>07_03_1789 -
           29527145-29527204,29527277-29527358,29527457-29527524,
           29527633-29527722,29527811-29527888,29527969-29528064,
           29528217-29528300,29528405-29528605,29528967-29529059,
           29529573-29529639,29530843-29530901,29531036-29531202,
           29531420-29531509,29531868-29531916,29532109-29532174,
           29532260-29532434,29532528-29532649
          Length = 548

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 18/55 (32%), Positives = 25/55 (45%)
 Frame = +1

Query: 400 SKVPFPPNEKEEHKQHQQLSIEVSLTKLFKCMTLAI*TKTNLTKMESFQRYKTTL 564
           ++ P  P   +  K     S+E    +LFK + +    K NLTKMES    K  L
Sbjct: 436 AREPIIPRTDKPFKTSIVFSLEEGPGQLFKALAVFALRKINLTKMESRPHKKKPL 490


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,760,406
Number of Sequences: 37544
Number of extensions: 376150
Number of successful extensions: 952
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 925
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 951
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2491484208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)