Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_H20
         (922 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1773.06c |||alcohol dehydrogenase |Schizosaccharomyces pombe...    62   1e-10
SPCC1442.16c |zta1|SPCC285.01c|NADPH quinone oxidoreductase/ARE-...    47   4e-06
SPBC1773.05c |tms1||hexitol dehydrogenase |Schizosaccharomyces p...    44   4e-05
SPBC1198.01 |||glutathione-dependent formaldehyde dehydrogenase ...    42   9e-05
SPCC13B11.04c ||SPCC777.01c|glutathione-dependent formaldehyde d...    41   3e-04
SPBC1539.07c |||glutathione-dependent formaldehyde dehydrogenase...    39   0.001
SPBC16A3.02c |||mitochondrial peptidase |Schizosaccharomyces pom...    32   0.13 
SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc...    31   0.17 
SPAC24C9.02c |||cytochrome c1 heme lyase|Schizosaccharomyces pom...    29   0.70 
SPBC342.01c |alg6|SPBC3F6.06c|glucosyltransferase Alg6|Schizosac...    27   4.9  
SPAC26F1.09 |gyp51||GTPase activating protein Gyp51 |Schizosacch...    27   4.9  
SPAC19A8.08 |upf2||nonsense-mediated decay protein Upf2|Schizosa...    26   8.6  
SPCC306.07c |||U3 snoRNP-associated protein Cic1/Utp30 family|Sc...    26   8.6  

>SPBC1773.06c |||alcohol dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 346

 Score = 61.7 bits (143), Expect = 1e-10
 Identities = 33/81 (40%), Positives = 52/81 (64%)
 Frame = +2

Query: 338 LTGFGGLKTVKILKKPEPTVGEGEVLIRVKACGLNFQDLIVRQGAIDSPPKTPFILGFEC 517
           ++GF  LK  +  + P+  +  GEVL+++KA  LN++DLI+ +G    P + P + G + 
Sbjct: 11  ISGFDQLKPEEY-EVPQK-LNPGEVLVKLKAASLNYRDLIITKGLYPLPLQLPVVPGSDG 68

Query: 518 AGEIEQVGENVTNFKVGDQVV 580
           AG IE+VGE+V  F+ GD VV
Sbjct: 69  AGIIEKVGEDVEGFEKGDSVV 89


>SPCC1442.16c |zta1|SPCC285.01c|NADPH quinone
           oxidoreductase/ARE-binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 329

 Score = 46.8 bits (106), Expect = 4e-06
 Identities = 28/80 (35%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
 Frame = +2

Query: 350 GGLKTVKILKKPEPTVGEGEVLIRVKACGLNFQDLIVRQGAIDSPPKTPFILGFECAGEI 529
           G    ++++ K  P      ++I+    GLN+ D  +R G   +P   P+I G E AG +
Sbjct: 12  GPSSVLQVITKEIPKPAPNGLVIKNAYAGLNYIDTYLRTGLYTAP--LPYIPGKEAAGVV 69

Query: 530 EQVGENV-TNFKVGDQVVAL 586
             VG+ V  +FKVGD+VV L
Sbjct: 70  AAVGDKVEADFKVGDRVVYL 89


>SPBC1773.05c |tms1||hexitol dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 360

 Score = 43.6 bits (98), Expect = 4e-05
 Identities = 31/88 (35%), Positives = 45/88 (51%), Gaps = 2/88 (2%)
 Frame = +2

Query: 407 EVLIRVKACGLNFQDLIV-RQGAI-DSPPKTPFILGFECAGEIEQVGENVTNFKVGDQVV 580
           +V + +KA G+   D+   ++G I D   K P ILG E AG + +VG+ V++ K GD V 
Sbjct: 31  QVKVAIKATGICGSDVHYWKEGGIGDFILKKPMILGHESAGVVVEVGKGVSSLKPGDPVA 90

Query: 581 ALPSTALGPSWCLYGPVRVRAARRNVCP 664
             P        C Y     R+ R N+CP
Sbjct: 91  VEPGCVC--RLCDY----CRSGRYNLCP 112


>SPBC1198.01 |||glutathione-dependent formaldehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 423

 Score = 42.3 bits (95), Expect = 9e-05
 Identities = 33/106 (31%), Positives = 53/106 (50%), Gaps = 3/106 (2%)
 Frame = +2

Query: 308 PPPXEMRAVVLTGFGGLKTVKILKKPEPTVGEG-EVLIRVKACGL-NFQDLIVRQGAIDS 481
           P    M+A V   + G   VKI + P+PT+    +V+++  AC + +  D  +  G +  
Sbjct: 32  PSGATMKACV---WDGPLNVKIAEVPKPTITHPKDVIVKTTACTICSGSDSHIFSGEMPG 88

Query: 482 PPKTPFILGFECAGEIEQVGENVTNFKVGDQVVALPSTALGP-SWC 616
             K   ILG E  G + + G+ V N ++GD+VV     A G  S+C
Sbjct: 89  IEKGA-ILGHESCGIVAEKGDEVNNLEIGDRVVIAFDLACGQCSFC 133


>SPCC13B11.04c ||SPCC777.01c|glutathione-dependent formaldehyde
           dehydrogenase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 380

 Score = 40.7 bits (91), Expect = 3e-04
 Identities = 25/60 (41%), Positives = 31/60 (51%)
 Frame = +2

Query: 407 EVLIRVKACGLNFQDLIVRQGAIDSPPKTPFILGFECAGEIEQVGENVTNFKVGDQVVAL 586
           EV I++   G+   D     G  D     P ILG E AG +E VG  VT  +VGD V+AL
Sbjct: 39  EVRIKIVNSGVCHTDAYTLSGK-DPEGLFPVILGHEGAGIVESVGPQVTTVQVGDPVIAL 97


>SPBC1539.07c |||glutathione-dependent formaldehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 378

 Score = 38.7 bits (86), Expect = 0.001
 Identities = 21/60 (35%), Positives = 30/60 (50%)
 Frame = +2

Query: 407 EVLIRVKACGLNFQDLIVRQGAIDSPPKTPFILGFECAGEIEQVGENVTNFKVGDQVVAL 586
           EV ++V    +   D     G +D     P +LG E AG +E +GE V N + GD V+ L
Sbjct: 36  EVRVKVDWSAVCHTDAYTLSG-VDPEGAFPIVLGHEGAGIVESIGEGVINVRPGDHVILL 94


>SPBC16A3.02c |||mitochondrial peptidase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 347

 Score = 31.9 bits (69), Expect = 0.13
 Identities = 27/107 (25%), Positives = 42/107 (39%), Gaps = 7/107 (6%)
 Frame = +3

Query: 504 WASNALVKSSKLAKMSPILRWATKWWLSRVPRLGRAG-------VCTXQYVYALPEGMSA 662
           +A   L   S++ + S   R    W     PR GR G       V   + V+ LP+G+S 
Sbjct: 84  FAGRVLAVGSEVKEFSATQR---VWGCQSFPRAGRQGGSCATHIVTGDKDVWHLPDGVSF 140

Query: 663 LDAVAITTNYVVAYLLLFEMANLTPGKXXLVHSAXGGVXKXVXXLXK 803
            +        + A+ +L     + PG   ++  A GGV      L K
Sbjct: 141 NEGAGFGIAGLTAWEVLVRQMKVKPGTKLVIEGASGGVGTFAVALAK 187


>SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1428

 Score = 31.5 bits (68), Expect = 0.17
 Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
 Frame = +2

Query: 407  EVLIRVKACGL-NFQDLIVRQGAIDSPPKTPFILGFECAGEIEQVGENVTNFKVGDQVVA 583
            EV++RVK C + + QD++ +  A+D P  T  I   E   ++  + EN    K+G  +  
Sbjct: 1055 EVVLRVKMCQMGDVQDVLGK--ALDPPSSTNIIRALEKLHQVGALSENEKLTKLGKFLSQ 1112

Query: 584  LPSTA 598
            LP  A
Sbjct: 1113 LPVDA 1117


>SPAC24C9.02c |||cytochrome c1 heme lyase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 216

 Score = 29.5 bits (63), Expect = 0.70
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = +2

Query: 269 PEKSNRGEKRMRTPPPXEMRAVVLTGFGGLKTVKILKKPEPTV 397
           PE+ N+ E+  + P P E+R   L   GG K  ++   P PT+
Sbjct: 3   PEQLNQ-EEESKCPVPPEVRDAWLKSHGGKKPSEVHDTPHPTM 44


>SPBC342.01c |alg6|SPBC3F6.06c|glucosyltransferase
           Alg6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 506

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 17/70 (24%), Positives = 31/70 (44%)
 Frame = +3

Query: 522 VKSSKLAKMSPILRWATKWWLSRVPRLGRAGVCTXQYVYALPEGMSALDAVAITTNYVVA 701
           V +S L  + P L + +KWW  R+P            ++     +  +D      N V+ 
Sbjct: 134 VIASHLLILVPPLMFYSKWWSRRIPNFVDRNASLIMVLF--QPALLLIDHGHFQYNCVML 191

Query: 702 YLLLFEMANL 731
            L+++ +ANL
Sbjct: 192 GLVMYAIANL 201


>SPAC26F1.09 |gyp51||GTPase activating protein Gyp51
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1031

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 19/69 (27%), Positives = 28/69 (40%)
 Frame = -2

Query: 558 KLVTFSPTCSISPAHSKPKMKGVFGGESMAP*RTIKSWKFRPQAFTRIRTSPSPTVGSGF 379
           K   FSP  S+S  H K K +      +      + SW   P    R  +  SP V S +
Sbjct: 491 KNTAFSPGTSLSTNHVKTKSRSAHNNSTSPFSTAVSSW-LNP---LRYPSDKSPRVISSY 546

Query: 378 LSILTVLRP 352
           L  + + +P
Sbjct: 547 LESVFISKP 555


>SPAC19A8.08 |upf2||nonsense-mediated decay protein
           Upf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1049

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = +3

Query: 525 KSSKLAKMSPILRWATKWWLSRV 593
           +SS L K+ P+LR+  ++WL+ V
Sbjct: 154 RSSHLLKVRPLLRFLIEFWLNGV 176


>SPCC306.07c |||U3 snoRNP-associated protein Cic1/Utp30
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 284

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +3

Query: 642 LPEGMSALDAVAITTNYVVAYLLLFEMANLTPGKXXLVH 758
           +P+G SA+D VAI T    +  +     NL   K  +VH
Sbjct: 219 IPKGWSAIDNVAIKTADSASLPIWTSDTNLAAHKRHIVH 257


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,925,871
Number of Sequences: 5004
Number of extensions: 57869
Number of successful extensions: 166
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 468512460
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)