Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_H19
         (876 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024792-6|AAF60686.2|  901|Caenorhabditis elegans Hypothetical ...    30   2.5  
U00065-2|AAL27237.1|  672|Caenorhabditis elegans Prion-like-(q/n...    29   4.4  

>AC024792-6|AAF60686.2|  901|Caenorhabditis elegans Hypothetical
           protein Y48G1A.1 protein.
          Length = 901

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
 Frame = +3

Query: 360 FSVCLPQTKNNVCRELCQGITGANIICHKE*KNKRVFLTVT*KCCRFSKVC-TWQWHKEA 536
           F   + Q  + + +E C   T AN I H     +R+  T   KC  F+K+C ++Q+H   
Sbjct: 22  FDRLVGQDADTITQEACG--TLANYIRHSSVFKRRLLFTELQKCSFFAKLCISFQFHSFE 79

Query: 537 ET 542
           +T
Sbjct: 80  DT 81


>U00065-2|AAL27237.1|  672|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 25
           protein.
          Length = 672

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 22/72 (30%), Positives = 30/72 (41%), Gaps = 2/72 (2%)
 Frame = +3

Query: 231 CEYTDDDLIDLNGNRGLCAGQTMGSTYFVHS*ATQLSCLLLADFSVCL--PQTKNNVCRE 404
           C  T+ +    NGN G  AGQTM +    +S     +C        CL   Q +NN+C +
Sbjct: 144 CPNTNSNTCSSNGNNGCLAGQTMVNGQCYNSVNIGSAC---QSTQQCLGGSQCQNNIC-Q 199

Query: 405 LCQGITGANIIC 440
              G    N  C
Sbjct: 200 CYSGYVNVNQQC 211


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,396,170
Number of Sequences: 27780
Number of extensions: 347493
Number of successful extensions: 774
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 752
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 774
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2202903780
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)