Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_H18
         (868 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC63.10c |||dolichol kinase |Schizosaccharomyces pombe|chr 3||...    27   2.6  
SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    27   2.6  
SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr 1||...    27   3.5  
SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces pombe...    27   4.6  
SPBC409.17c |||DUF1769 family protein|Schizosaccharomyces pombe|...    27   4.6  
SPAC13C5.07 |rad32|mre11|Rad32 nuclease|Schizosaccharomyces pomb...    27   4.6  
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa...    26   6.0  

>SPCC63.10c |||dolichol kinase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 465

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = +2

Query: 410 CTGITGMCYFQYTWRLPLYGSVAAIILL 493
           CTG+TG+C+  +++ +    SV + +LL
Sbjct: 128 CTGLTGLCFATFSYEVSPVVSVLSGVLL 155


>SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 475

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +3

Query: 318 SDETMYFNERSRETQAGRREKSWFDPEI*RNVQG 419
           SD    F+ + R T+ G+R  + F   I  N+QG
Sbjct: 271 SDSQQSFHHKGRNTRKGQRHNNGFYRNIANNIQG 304


>SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 992

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +1

Query: 247 SSKVCCHHNFVNRPLLDFQQVSFSVTRPCTSMN 345
           S K+    N +NRP+LD    SFS +R   S N
Sbjct: 175 SPKLGSPFNHINRPVLDRSPSSFSQSRSAVSGN 207


>SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 830

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 15/55 (27%), Positives = 26/55 (47%)
 Frame = +1

Query: 217 IGKNYPIRILSSKVCCHHNFVNRPLLDFQQVSFSVTRPCTSMNDQEKPKREEEKK 381
           +G   PI  + SK+  H    + P    ++VSFS+T    + +D+   K    +K
Sbjct: 53  LGNTSPIINVESKIPFHRRANSTPEESRKRVSFSLTSNDGAKSDRSSQKSSNSRK 107


>SPBC409.17c |||DUF1769 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 222

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 12/44 (27%), Positives = 23/44 (52%)
 Frame = -1

Query: 367 PAWVSLDRSLKYMVSSLKSLLAGNPVMAYSQNCDGNKLYLKEFE 236
           P+ +S+      M  S+K+   G P+  + +  DGN ++  EF+
Sbjct: 178 PSTLSISIPYTKMSFSIKNYYNGQPLRYFCKTRDGNVIFAVEFD 221


>SPAC13C5.07 |rad32|mre11|Rad32 nuclease|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 649

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = +1

Query: 334 TSMNDQEKPKREEEKKVGLIQRFKEMYRDYWYVLLPVHMATSA 462
           +++ D+       E KV  ++   ++YRD W+ LL VH   SA
Sbjct: 187 SNVRDERLYHSFRENKVKFLR--PDLYRDEWFNLLTVHQNHSA 227


>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
           Msa1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 533

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
 Frame = +1

Query: 295 DFQQVSFSVTRPCTSMNDQEKPKREEEKKVGLIQRFKEMYR--DYWYVLLP 441
           D QQ +++     T    Q+KP R E +++  +Q+F   Y+   Y Y + P
Sbjct: 412 DSQQAAYAAVCGKTRSPHQKKPLRVEFRQLRPMQQFSPQYQYPSYPYPMFP 462


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,099,892
Number of Sequences: 5004
Number of extensions: 65060
Number of successful extensions: 144
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 432473040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)